Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120918.seq
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)                       31   1.1  
SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04)                    29   3.3  
SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   3.3  
SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)               29   4.4  
SB_48322| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7)                     28   5.8  
SB_57364| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_6135| Best HMM Match : CSD (HMM E-Value=5.4)                        28   5.8  

>SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)
          Length = 139

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 282 MPVMQDERKMSKRKKKVINNNKYILFNSWYTKIK 383
           +PV    +++   + K  NN KY L   WY+K++
Sbjct: 7   LPVQNQAKRLRTWRSKTRNNTKYKLICIWYSKVR 40


>SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 521 KRQRSQFQRAKXDRLR-CLPTQIWAELKESCEMRDKLYSEFYSLLK 655
           K  R ++  +K + LR C P + W+E+K    M+  + S+  S+LK
Sbjct: 238 KSCREKYYTSKVEHLRNCEPRKWWSEVKSLSGMKSAVRSDTRSVLK 283


>SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04)
          Length = 447

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 521 KRQRSQFQRAKXDRLR-CLPTQIWAELKESCEMRDKLYSEFYSLLK 655
           K  R ++  +K + LR C P + W+E+K    M+  + S+  S+LK
Sbjct: 59  KSCREKYYTSKVEHLRNCEPRKWWSEVKSLSGMKSAVRSDTRSVLK 104


>SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 368

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 368 PTVKQNVFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLFS 249
           P    N+ +++ +L  A   + +  HDR + E   N+LF+
Sbjct: 313 PREVHNILLLMGYLNSALNPYMYSFHDRQFKEAFKNILFN 352


>SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)
          Length = 710

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 195 RFQFIQQLFIFAHGRSFCRRLLLRHVYH 112
           RF    Q  I+AH  SF +R+LLR + H
Sbjct: 22  RFPRNPQKLIYAHQNSFKKRILLRRIEH 49


>SB_48322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 386 LLDLSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLFSKKFT 237
           L+  ++ T+K N     NH+L  F H  F + +   +E+ V+  F    T
Sbjct: 102 LILTTLRTIKGNFMFFENHILAKFLHGKFFIGNPETIEESVDATFEFNLT 151


>SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7)
          Length = 504

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 485 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 363
           TH  SV+K   K+C+  RV +Q  H R  R      ++VPT
Sbjct: 395 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 434


>SB_57364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 485 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 363
           TH  SV+K   K+C+  RV +Q  H R  R      ++VPT
Sbjct: 240 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 279


>SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 485 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 363
           TH  SV+K   K+C+  RV +Q  H R  R      ++VPT
Sbjct: 289 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 328


>SB_6135| Best HMM Match : CSD (HMM E-Value=5.4)
          Length = 254

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 485 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 363
           TH  SV+K   K+C+  RV +Q  H R  R      ++VPT
Sbjct: 198 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,122,702
Number of Sequences: 59808
Number of extensions: 452670
Number of successful extensions: 1078
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)