Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120917.seq
         (652 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    27   0.18 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   2.2  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    23   2.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.0  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   5.0  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    22   5.0  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   6.7  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.8  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 620 SCTPECSWNLRNSRTSRSDSGPVLGSIKHTIMLSTSNPTCHCP 492
           +C P  + +   +R +  DS P L     T    T++ TCHCP
Sbjct: 48  TCKPGFTGSNCQNRINLCDSSPCLNGA--TCQDHTTHYTCHCP 88


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 483 LVGVIPLNTINMDLNSLISKFAVPRVMVTLL 391
           +VGV PLN +N +   L   F   +V+ T L
Sbjct: 37  IVGVFPLNHLNEEPEKLHFTFKSWKVLYTSL 67


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 6/28 (21%), Positives = 16/28 (57%)
 Frame = -2

Query: 300 LTMSSIDSGFSAIYICSIYYRRVRCANW 217
           + ++S+   F +I++C + Y  +   +W
Sbjct: 301 MALASVPFIFDSIHLCDVCYSTIGTVSW 328


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 614 TPECSWNLRNSRTSRSDSGPV 552
           TPE +W L   R S S+   +
Sbjct: 442 TPEITWELYGRRLSNSERNQI 462


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 318 TLLEPSLTMSSIDSGFSAIYICSIYYRRVRCAN 220
           +LL P L  S++      +Y+C + Y  +  AN
Sbjct: 558 SLLNPIL--SNVTFVIDVVYVCDVCYSTIEEAN 588


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 318 TLLEPSLTMSSIDSGFSAIYICSIYYRRVRCAN 220
           +LL P L  S++      +Y+C + Y  +  AN
Sbjct: 283 SLLNPIL--SNVTFVIDVVYVCDVCYSTIEEAN 313


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 305 GSNKVGTNSIFLGTVYD 355
           G+N++GT  IFL   +D
Sbjct: 492 GNNRMGTCRIFLAPQFD 508


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 587 NSRTSRSDSGPVLGSIK 537
           N RT RSD GP +  ++
Sbjct: 273 NPRTYRSDEGPQITELE 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,185
Number of Sequences: 336
Number of extensions: 3364
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)