Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120917.seq
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    30   1.6  
Z73970-1|CAA98244.1|  254|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical ...    29   3.8  
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
           protein Y45F10B.10 protein.
          Length = 1592

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 301 FDYVVYR*RFFGNIHLLNLLSPCAMRKL 218
           F+YV Y  R+FG  HLL+L   CA + L
Sbjct: 750 FEYVDYVTRYFGISHLLSLYEECATQIL 777


>Z73970-1|CAA98244.1|  254|Caenorhabditis elegans Hypothetical
           protein C29A12.1 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/34 (52%), Positives = 19/34 (55%)
 Frame = -3

Query: 614 TPECSWNLRNSRTSRSDSGPVLGSIKHTIMLSTS 513
           TP  S NL   R SRS    VLGS+K TI  S S
Sbjct: 210 TPFESPNLPRKRRSRSLGRKVLGSVKKTIRRSVS 243


>AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical
           protein Y48G9A.9a protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 108 NLNSLTEASPSLGQSSESVESDENKRLNVK-LNNARVANLRI 230
           N N++ E  P+  QSS   E+D++ R  V+ LNN  +A  ++
Sbjct: 17  NNNNVNEKRPASAQSSNGTETDDHHRKYVETLNNFIIATEKL 58


>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
           protein C01G5.4 protein.
          Length = 1079

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 380 ASTSSNVTMTRGTANFD--IKEFKSMFIVFKGIT 475
           A+TS+NVT  + T NFD  +K    +  V  GIT
Sbjct: 133 ATTSTNVTNAKSTTNFDGYLKHISVIAHVANGIT 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,094,995
Number of Sequences: 27780
Number of extensions: 316454
Number of successful extensions: 1045
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)