Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120917.seq
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.63 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.5  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          24   1.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.9  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 353 DYGVKSPNAAS-TSSNVTMTRGTAN 424
           +Y +   +AAS TSS V +TRGT N
Sbjct: 6   NYALDVSSAASKTSSKVMLTRGTVN 30


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 254 QMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYD 355
           Q  +  KP +   +V    N  G   IFLG  YD
Sbjct: 490 QYRLNHKPFTYHIVVNSDKNVKGMVRIFLGPKYD 523


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 254 QMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYD 355
           Q  +  KP +   +V    N  G   IFLG  YD
Sbjct: 490 QYRLNHKPFTYHIVVNSDKNVKGMVRIFLGPKYD 523


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 254 QMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYD 355
           Q  +  KP +   +V    N  G   IFLG  YD
Sbjct: 116 QYRLNHKPFTYHIVVNSDKNVKGMVRIFLGPKYD 149


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 480 VGVIPLNTINMDLNSLISKFAVPRVMVTLLDVLAAF-GDL 364
           +G +P+N IN+ L   I       ++ +LL ++ A+ GD+
Sbjct: 72  IGSVPVNNINLILLQNIIDICWITMVYSLLGIIIAYTGDV 111


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +3

Query: 111 LNSLTEASPSLGQSSESVESDENK----RLNVKLNNARVANLR 227
           ++SL E       SS SVE  EN+     LN +  + R+ +LR
Sbjct: 326 ISSLDEIRTRYKDSSSSVEGWENRATIPELNEEFRDLRLQDLR 368


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +1

Query: 484 NCRGQWHVG--FEVDSMIVCLIDPNTGPLSEREVRELRKFQL 603
           NC+   H     ++   + C  DPN  P+S  ++      QL
Sbjct: 34  NCKNYDHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQL 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,310
Number of Sequences: 438
Number of extensions: 4121
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)