Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120917.seq
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30260.1 68414.m03701 expressed protein                             35   0.054
At1g07330.1 68414.m00781 hypothetical protein                          29   2.7  
At5g23890.1 68418.m02806 expressed protein weak similarity to SP...    29   3.5  
At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putat...    28   6.2  
At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putat...    28   6.2  
At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putat...    28   6.2  
At1g01780.1 68414.m00097 LIM domain-containing protein similar t...    28   6.2  
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ...    27   8.2  
At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-lik...    27   8.2  

>At1g30260.1 68414.m03701 expressed protein
          Length = 97

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = +2

Query: 290 DIVKEGSNKVGTNSIFLGTVYDYGVKSP-------NAASTSSNVTMTRGTANFDIKEFKS 448
           D +KE   +VGT+SIF  +     + SP       + +S S++ + T G   F + E + 
Sbjct: 31  DTIKEEEREVGTDSIFPSSFNSKKISSPFTSPYSSSVSSASASASCTSGLNKFPVTENRG 90

Query: 449 MFIVFK 466
            F VFK
Sbjct: 91  SFPVFK 96


>At1g07330.1 68414.m00781 hypothetical protein
          Length = 685

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 493 GQWHVGFEVDSMIVCLIDPNTGPLSEREVRELRKFQLHSGVHEKRGSSAS 642
           G+ +    V++ +V L+  NTG LS     E +++  H G   K+G   S
Sbjct: 377 GKGNGDLRVENPLVGLVPRNTGSLSSSLAAERQRYVEHFGYSSKKGHKLS 426


>At5g23890.1 68418.m02806 expressed protein weak similarity to
           SP|P12957 Caldesmon (CDM) {Gallus gallus}
          Length = 946

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 96  TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGD 242
           T    ++SLT    S+ QSS+ + SDE K  N + +N +  +  I   D
Sbjct: 120 TKKQEMHSLTSQQESMIQSSDEISSDEIKVANSEESNLKDEDKSIESND 168


>At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 466

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
 Frame = +2

Query: 293 IVKEGSNKVGTNSIFLGTVYDYGVKSPNAAST----SSNVTMTRGTA----NFDIKEFKS 448
           +V + S     N + L  V+DY    P+A  T    SS   + +G A    N+D K +K+
Sbjct: 75  VVNQDSFYHNVNEVELVRVHDYNFDHPDAFDTEQLLSSMEKLRKGQAVDIPNYDFKSYKN 134

Query: 449 MFIVFKGITPTKTVEDNGML 508
                + + P+  +   G+L
Sbjct: 135 NVFPPRRVNPSDVIILEGIL 154


>At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 466

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
 Frame = +2

Query: 293 IVKEGSNKVGTNSIFLGTVYDYGVKSPNAAST----SSNVTMTRGTA----NFDIKEFKS 448
           +V + S     N + L  V+DY    P+A  T    SS   + +G A    N+D K +K+
Sbjct: 75  VVNQDSFYHNVNEVELVRVHDYNFDHPDAFDTEQLLSSMEKLRKGQAVDIPNYDFKSYKN 134

Query: 449 MFIVFKGITPTKTVEDNGML 508
                + + P+  +   G+L
Sbjct: 135 NVFPPRRVNPSDVIILEGIL 154


>At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 466

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
 Frame = +2

Query: 293 IVKEGSNKVGTNSIFLGTVYDYGVKSPNAAST----SSNVTMTRGTA----NFDIKEFKS 448
           +V + S     N + L  V+DY    P+A  T    SS   + +G A    N+D K +K+
Sbjct: 75  VVNQDSFYHNVNEVELVRVHDYNFDHPDAFDTEQLLSSMEKLRKGQAVDIPNYDFKSYKN 134

Query: 449 MFIVFKGITPTKTVEDNGML 508
                + + P+  +   G+L
Sbjct: 135 NVFPPRRVNPSDVIILEGIL 154


>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 205

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 557 GRCPNERCANCANSNCTLVYTKNEAAQQVL 646
           G C ++ C  CA+  CTL ++   +   VL
Sbjct: 121 GECFHKTCFRCAHGGCTLTHSSYASLDSVL 150


>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein GI:6996560
           from [Nicotiana plumbaginifolia]
          Length = 430

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 312 LEPSLTMSSIDSGFSAIYICSIYYRRVR 229
           L P +T +++   FSA   CS YYR  R
Sbjct: 155 LSPEVTDAALFDSFSAFNSCSSYYRDAR 182


>At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-like
           protein GI:12006424 from [Arabidopsis thaliana];
           contains Pfam profiles PF03731: Ku70/Ku80 N-terminal
           alpha/beta domain, PF02735: Ku70/Ku80 beta-barrel
           domain, PF03730: Ku70/Ku80 C-terminal arm, and PF02037:
           SAP domain; contains TIGRfam profile TIGR00578:
           ATP-dependent DNA helicase ii, 70 kDa subunit
          Length = 621

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 105 LNLNSLTEASPSLGQSSESVESDENKRLNVK 197
           LN + LTE  PS+GQ  E ++    KR+  K
Sbjct: 234 LNSDELTEFMPSVGQKLEDMKDQLKKRVLAK 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,106,725
Number of Sequences: 28952
Number of extensions: 291413
Number of successful extensions: 763
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)