Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120916.seq
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   4.1  
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom...    26   4.1  
SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24 ...    25   7.2  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   7.2  
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    25   9.5  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 534  VISICSANLPNQTHRCTVFLCILYGGLSANRFDRLVYRLRFDNISA 397
            VIS C   + N  H  +   C+L   +SA + +R V +  +DN+++
Sbjct: 1008 VISACELVVNNFLHPQSSLYCVLDSDISAGKNNR-VLKFVYDNLAS 1052


>SPCC1442.17c ||SPCC285.02c|DUF292 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 311 LQVAKHFF*AKAVIIKIYAFNALL*SSSSIWHVTAAPP 198
           LQV       + V+++  AFN  +   SS++HV AA P
Sbjct: 65  LQVDVEILANRCVVLEKRAFNDSMSFKSSLYHVMAAAP 102


>SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -3

Query: 224 IWHVTAAPPVNT--NKPPFSQTT-ASKQSLINANF 129
           IWHV+A+P V +  N P    T+  S + +  ANF
Sbjct: 25  IWHVSASPEVGSKYNLPTVPTTSHVSYRQIAKANF 59


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 228 RRRLQKRIKCIDFDYYGLCSKKMFCNLQTN-LQKCVDQHYAELDVLTRQIYMSNPLVMLK 404
           R  L+  +  +D +   LC K +   L  + LQK +     ELD L R++Y  +P  + +
Sbjct: 221 RSYLEFILSNLDLECLTLCLKIIKGILTLDELQKAIKLKQTELDKLERRLYRPSPQNIFE 280

Query: 405 CYQ 413
            ++
Sbjct: 281 IFE 283


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 1   RVASSSPLFIMERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDC 153
           ++     +  +ER+   LN G    +TTK I+D     I+    +A ++ C
Sbjct: 267 KIREREVMITLERVKKILNAGANVILTTKGIDDLCLKSIIEAGAMA-VRRC 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,873
Number of Sequences: 5004
Number of extensions: 51379
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)