Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120916.seq
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)                 30   1.9  
SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10)                   28   5.8  
SB_23092| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)
          Length = 412

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 223 IDDDDYKSALNA*ILIITAFAQKKCFATCKLIYKNASTNITLNWTC*RVKFTC 381
           + D++ +   +A  L + AFA KKC  T  +  KNA  +    W C R    C
Sbjct: 350 VGDEELEDFDDAARLSLPAFA-KKCMDTAAVCRKNAGKDWNKRWACRRAFVKC 401


>SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10)
          Length = 218

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = -3

Query: 236 SSSSIWHVTAAPPVNTNKPPFSQTTASKQSLINANFALATILSRKRSSISFVVI*GRTPR 57
           S   + H+  A P   NKP  S  T   ++    N     +L  + + ++F    GRTP 
Sbjct: 136 SLQELEHLLDADPRYVNKPSSSGQTPLHKAAGKGNIESVRLLLTRGADVNFADKQGRTPM 195

Query: 56  FS*FNK 39
              +NK
Sbjct: 196 LLAWNK 201


>SB_23092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 408 YQNGAYRLNGQIDLHLNRHIKCIKTQYNDEFDLVDLHYKLI*QAHTASTSIPTT 569
           + N  YR+NG  D+   RH + I+   N   DL + H        T +T+   T
Sbjct: 129 WANLVYRINGFKDIICERHNRTIQCPANKTIDLSNNHEDNTTTVQTTATTAKKT 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,541,613
Number of Sequences: 59808
Number of extensions: 386031
Number of successful extensions: 945
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)