Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120916.seq
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23370.1 68417.m03370 hypothetical protein predicted proteins...    29   2.7  
At2g02680.1 68415.m00207 DC1 domain-containing protein contains ...    29   3.6  
At4g23360.1 68417.m03369 expressed protein predicted proteins, A...    28   6.2  
At4g23350.1 68417.m03368 expressed protein predicted proteins, A...    28   6.2  
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ...    27   8.2  
At2g02610.1 68415.m00200 DC1 domain-containing protein   contain...    27   8.2  

>At4g23370.1 68417.m03370 hypothetical protein predicted proteins,
           Arabidopsis thaliana contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function
          Length = 1021

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 465 IKCIKTQYNDEFDLVDLH 518
           IK +KT+Y D FD +D+H
Sbjct: 667 IKSLKTEYGDIFDCIDIH 684


>At2g02680.1 68415.m00207 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 649

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 517 CKSTKSNSSLYCVFMHFIWRFKCKSI 440
           CKSTK N  L C+   FI  F+C ++
Sbjct: 501 CKSTKENQVLNCIEGDFIICFECATL 526


>At4g23360.1 68417.m03369 expressed protein predicted proteins,
           Arabidopsis thaliana contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function; expression
           supported by MPSS
          Length = 873

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 465 IKCIKTQYNDEFDLVDLHYKLI*QAH 542
           IK  KT++ D FD +D+H +L    H
Sbjct: 51  IKSFKTEHGDIFDCIDIHKQLAFDHH 76



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 465 IKCIKTQYNDEFDLVDLHYKLI*QAH 542
           IK  KT++ D FD +D+H +L    H
Sbjct: 519 IKSFKTEHGDIFDCIDIHKQLALDHH 544


>At4g23350.1 68417.m03368 expressed protein predicted proteins,
           Arabidopsis thaliana contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function
          Length = 386

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 465 IKCIKTQYNDEFDLVDLHYKLI*QAH 542
           IK  KT++ D FD +D+H +L    H
Sbjct: 51  IKSFKTEHGDIFDCIDIHKQLAFDHH 76


>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
           contains Pfam domain, PF01207: Dihydrouridine synthase
           (Dus)
          Length = 700

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 195 NWRRGCDMPYRRRRLQKRIKCIDFDYYGLCSKKMFCNLQ 311
           NW       + R R Q+  K  D+DY   C+K    NLQ
Sbjct: 498 NWGATAVTIHGRSRQQRYSKSADWDYIYQCTKNATTNLQ 536


>At2g02610.1 68415.m00200 DC1 domain-containing protein   contains
           Pfam profile PF03107: DC1 domain
          Length = 627

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 517 CKSTKSNSSLYCVFMHFIWRFKCKSI 440
           CKSTK+   L C+   FI  F+C ++
Sbjct: 481 CKSTKNKKVLNCIECDFIICFECATL 506


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,379,099
Number of Sequences: 28952
Number of extensions: 260696
Number of successful extensions: 613
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)