Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120915.seq
         (645 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    25   0.53 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.8  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   6.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.7  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 265 IINVYNKTEMCIRATFDGRYVVTHDILMCFVNKS-YVKQLLRGVDTCITLQQLVKMY 432
           ++N  N T + +    +GR+ V +D +   +N S  V +    +  C  ++ LV ++
Sbjct: 181 VVNTINLTFLTLLMILEGRFRVINDGIQALINDSRKVTRFPTELTFCNKIKHLVNLH 237


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 595 YY*YKVFLIVNTQFLYFC 542
           YY Y  F+I     L++C
Sbjct: 213 YYFYSAFIIFTIHLLFYC 230



 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 292 FQFYYKHLLF 263
           + FYY HLLF
Sbjct: 259 YYFYYMHLLF 268


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 608 VVCCLLLIQSF 576
           VVCCLLL+ S+
Sbjct: 6   VVCCLLLMFSY 16


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +3

Query: 357 KQELCKAVAARG*HLHYTTATC 422
           ++ELC     R    HY   TC
Sbjct: 184 QEELCLVCGDRASGYHYNALTC 205


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,584
Number of Sequences: 336
Number of extensions: 3334
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)