Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120915.seq
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98860-2|CAB11545.1|  337|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81536-7|CAB04367.1|  338|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U53139-7|AAK18935.1|  235|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z98860-2|CAB11545.1|  337|Caenorhabditis elegans Hypothetical
           protein Y26G10.2 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/71 (22%), Positives = 37/71 (52%)
 Frame = +1

Query: 265 IINVYNKTEMCIRATFDGRYVVTHDILMCFVNKSYVKQLLRGVDTCITLQQLVKMYSPEF 444
           I+N+Y K++ CIR  F+   ++ +  +  F N  +    +       +++++ K  SP +
Sbjct: 126 ILNMYRKSKTCIRRFFE---LILYIFVFLFPNIMFYGFQIPDQS---SIKEMTKQISPYY 179

Query: 445 GLCVNSKNMFV 477
             C+++ N+ V
Sbjct: 180 PDCIDNPNIIV 190


>Z81536-7|CAB04367.1|  338|Caenorhabditis elegans Hypothetical
           protein F40D4.9a protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 631 TIINTVDMSYVAYY*YKVFLIVNTQFLYFCPTT 533
           T+  T+ MS   +  + V L +    LYFCP+T
Sbjct: 128 TVFYTICMSIQVFQLFIVALAIERFLLYFCPST 160


>U53139-7|AAK18935.1|  235|Caenorhabditis elegans Hypothetical
           protein F18E3.10 protein.
          Length = 235

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 545 LSNHSHLPKRVF*EI-DVNTDSVNTNIFLLFTHKPNSGLYILTSCCS 408
           +S HS +P +VF  I   N D+V       F   PN+GLY +  C S
Sbjct: 192 VSQHSKVPDKVFHRIASSNGDTVG------FLRAPNNGLYDIVICPS 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,083,442
Number of Sequences: 27780
Number of extensions: 285672
Number of successful extensions: 590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)