Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120915.seq
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11010.3 68418.m01286 pre-mRNA cleavage complex-related low s...    29   2.0  
At5g11010.2 68418.m01285 pre-mRNA cleavage complex-related low s...    29   2.0  
At5g11010.1 68418.m01284 pre-mRNA cleavage complex-related low s...    29   2.0  
At5g06040.1 68418.m00669 self-incompatibility protein-related          27   8.1  

>At5g11010.3 68418.m01286 pre-mRNA cleavage complex-related low
           similarity to SP|Q92989 Pre-mRNA cleavage complex II
           protein Clp1 {Homo sapiens}
          Length = 368

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/29 (37%), Positives = 22/29 (75%)
 Frame = +2

Query: 53  YEMVISVLVYLSPAQILNLNLPLAYQKSV 139
           YE+++ VL Y+SP+ ++ +N+  AY K++
Sbjct: 158 YELLVDVLRYVSPSHVVKINIS-AYNKNL 185


>At5g11010.2 68418.m01285 pre-mRNA cleavage complex-related low
           similarity to SP|Q92989 Pre-mRNA cleavage complex II
           protein Clp1 {Homo sapiens}
          Length = 368

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/29 (37%), Positives = 22/29 (75%)
 Frame = +2

Query: 53  YEMVISVLVYLSPAQILNLNLPLAYQKSV 139
           YE+++ VL Y+SP+ ++ +N+  AY K++
Sbjct: 158 YELLVDVLRYVSPSHVVKINIS-AYNKNL 185


>At5g11010.1 68418.m01284 pre-mRNA cleavage complex-related low
           similarity to SP|Q92989 Pre-mRNA cleavage complex II
           protein Clp1 {Homo sapiens}
          Length = 318

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/29 (37%), Positives = 22/29 (75%)
 Frame = +2

Query: 53  YEMVISVLVYLSPAQILNLNLPLAYQKSV 139
           YE+++ VL Y+SP+ ++ +N+  AY K++
Sbjct: 158 YELLVDVLRYVSPSHVVKINIS-AYNKNL 185


>At5g06040.1 68418.m00669 self-incompatibility protein-related 
          Length = 111

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 316 GRYVVTHDILMCFVNKSYVKQ 378
           G +++T D+L+CF + S+VKQ
Sbjct: 70  GFHILTKDLLLCFSSCSHVKQ 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,589,964
Number of Sequences: 28952
Number of extensions: 237944
Number of successful extensions: 481
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)