Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120914.seq
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    28   1.0  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.8  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   4.1  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.1  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    26   4.1  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   7.2  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   7.2  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.5  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   9.5  

>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 586 FSVASSHNHFVGKQNERSVASAKSALPP 503
           FS + SHNH    Q E+S +++K ++ P
Sbjct: 539 FSKSKSHNHHPSSQVEKSTSNSKGSMLP 566


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 200 STSTASTNRRLSMPTKSSTCSR*RGKAGRPAVFAPTHSAHYQI 328
           S+S+ S++R  S  T   T S  +  + RP VF  T  +HY I
Sbjct: 163 SSSSKSSSRSSSRTTSHRTTSH-KSSSYRPTVFPYTTISHYNI 204


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 602  SCPSPFQRRVEPQSFRWQ 549
            +CPS   RRVE + F WQ
Sbjct: 1172 NCPSEVIRRVEKKEFPWQ 1189


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 179 IVNGQYVSTSTASTNRRLSMPTKSSTCS 262
           I  G Y STS +ST+   + P+ SST S
Sbjct: 129 ISGGIYSSTSASSTSSSTATPSSSSTTS 156


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 588 VSASRRATIISLANKMSDRL--LPPNLRCH 505
           V+  RR + ISLAN++S  L   PP+ R H
Sbjct: 683 VTEPRRISAISLANRVSQELGGNPPSARSH 712


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 585 SASRRAT-IISLANKMSDRLLPPNLRCHRQFLRQIVNFGN 469
           SASR+AT ++    ++SD LLP +L    Q L  + N  +
Sbjct: 591 SASRKATYLLGEVLRLSDELLPIHLGAKIQSLPSLFNMAS 630


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 118 GDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHAD 243
           GDE     V+ D  S    V+  +   ++  GKY+ TF H D
Sbjct: 48  GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 199 HVLPVHNLHILNCW 158
           HVLP+  L +LNC+
Sbjct: 405 HVLPIRQLFLLNCY 418


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 241 RHAQTSICTCRRRGHVLPVHNLHILN 164
           R A T +   R    +LPVH LH+ +
Sbjct: 776 RQAMTRLKGLRETNSILPVHQLHMFH 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,593
Number of Sequences: 5004
Number of extensions: 53091
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)