Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120914.seq
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0110 - 5371536-5372882 31 0.60
11_06_0445 - 23679918-23680282,23680415-23683349 31 1.1
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906... 29 3.2
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 29 3.2
11_06_0263 + 21777178-21777342,21777742-21777823,21777939-217780... 29 4.2
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90... 28 5.6
04_01_0044 + 489486-490012,490903-491332 28 5.6
01_03_0010 - 11608537-11608786,11608816-11608940,11609152-116092... 28 5.6
02_05_1333 - 35761405-35761822,35762551-35763155 28 7.4
11_06_0442 - 23622633-23623000,23623149-23623721,23624795-236253... 27 9.8
>10_02_0110 - 5371536-5372882
Length = 448
Score = 31.5 bits (68), Expect = 0.60
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = -3
Query: 337 ITPDLVMSTVCGCKY----SG-SPCFATLSGACAGFGRHAQTSICTCRRRGHVLPVHNLH 173
I+PD +S + +Y +G S C+ G+ G R Q S+CT R R H L VH
Sbjct: 320 ISPDGKLSFIVTSRYFDGSAGVSSCYHLAFGSNGGCTRE-QVSVCTWRVRLHELRVHRSD 378
Query: 172 ILNC-WRC 152
+N W C
Sbjct: 379 AMNLRWFC 386
>11_06_0445 - 23679918-23680282,23680415-23683349
Length = 1099
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -1
Query: 600 LPEPVSASRRATIISLANKMSDRLLPPNLRCHRQFLRQIVNFGNNI 463
+PE +S+ R I+L + + +PP+L H FL+QI+ N+I
Sbjct: 136 IPETLSSCSRLETINLYSNSIEGKIPPSL-AHCSFLQQIILSNNHI 180
>11_03_0026 -
9057965-9058234,9059410-9059522,9059612-9059802,
9060606-9060720,9061781-9061907,9062915-9062990,
9064247-9064365,9065430-9065593,9065666-9065779,
9065966-9066065,9066276-9066340,9068175-9068253,
9069513-9069659,9069904-9070161,9070657-9070852,
9071179-9071402,9072531-9072554
Length = 793
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 335 HARFGNEHCVWVQIQRVALLCHA 267
H FG++H + VQ+Q A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 430 KYAPAVEMDTNDVIAKIDDLTQKLTVATQIWRK 528
++AP+VE +V A I+ +T+K+ + + W+K
Sbjct: 304 RHAPSVEHSLAEVAAHIEAVTEKIIMEEEKWKK 336
>11_06_0263 +
21777178-21777342,21777742-21777823,21777939-21778028,
21778447-21778604,21778852-21778873,21779048-21779175,
21779486-21779685,21780600-21780663,21781594-21781704,
21781804-21781941,21782306-21782448,21782521-21782575,
21782921-21782977,21783093-21783176
Length = 498
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 311 CVWVQIQRVALLCHAIWSMCWIWSACSN 228
C+ V I V CH W +C WS N
Sbjct: 161 CILVLISSVGQSCHKNWVLCIAWSPDGN 188
>04_01_0083 +
904473-905167,905247-905347,905902-905994,907322-907968
Length = 511
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 226 TFEHADQIQHMLQIAWQSRATRCICTHTQCSL 321
+ EH I+H ++I WQ R +C C L
Sbjct: 255 SLEHHQAIRHAVKIGWQKYIKRYLCLAIFCML 286
>04_01_0044 + 489486-490012,490903-491332
Length = 318
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 280 CFATLSGACAGFGRHAQTSICTC 212
C T G C G G + TS C+C
Sbjct: 267 CSPTCKGLCVGCGENLNTSSCSC 289
>01_03_0010 -
11608537-11608786,11608816-11608940,11609152-11609217,
11609741-11609872,11610507-11610608,11610743-11610940,
11611015-11611161,11611321-11611431,11613241-11613780,
11613847-11614003,11614148-11614297,11614375-11614514,
11615346-11615468,11615561-11615677,11617184-11617357,
11617768-11617909,11618076-11618194,11619773-11619955
Length = 991
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +1
Query: 151 DIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHMLQIAWQSRATRCIC 300
D++S + + + + H+D ++ T E DQ+ ++L I C C
Sbjct: 565 DVSSVIGHYDTSKQNVHHMDNEWWETQERGDQVDYVLDIGEVGPRATCCC 614
>02_05_1333 - 35761405-35761822,35762551-35763155
Length = 340
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 280 CFATLSGACAGFGRHAQTSICTC 212
C T G C G G + TS C+C
Sbjct: 293 CSPTCKGLCLGCGENLNTSSCSC 315
>11_06_0442 -
23622633-23623000,23623149-23623721,23624795-23625335,
23625807-23625982,23626081-23626804
Length = 793
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 600 LPEPVSASRRATIISLANKMSDRLLPPNL-RCHRQFLRQIVNFGNNI 463
LPE +S+ I+ L + + +PP++ +C FL+QI+ NNI
Sbjct: 8 LPETISSCSLLEIVDLFSNSIESEIPPSIGQC--SFLQQIILGTNNI 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,067,108
Number of Sequences: 37544
Number of extensions: 388167
Number of successful extensions: 1074
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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