Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120914.seq
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26)                 29   2.5  
SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)                 29   2.5  
SB_19726| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_22003| Best HMM Match : Ank (HMM E-Value=1.8e-39)                   29   3.3  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_45993| Best HMM Match : TEP1_N (HMM E-Value=0.48)                   28   7.6  

>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -3

Query: 307 CGCKYSGSPCFATLSGACAGFGRHAQTSICTCRRRGHVLPVHNLHILNCWRCPW 146
           C C Y G+     +S   A   R A+  +CT  R   +L  +N  + NC RC +
Sbjct: 175 CVCVYGGTG----ISEQIAELKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTY 224


>SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26)
          Length = 333

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 260 SMCWIWSACSNVDLYLPSTWTRI 192
           SMC +++ C N+ L++P T+  I
Sbjct: 258 SMCTVYNVCKNIPLHIPQTFLHI 280


>SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)
          Length = 323

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 302 VQIQRVALLCHAIWSMCWIWSACS--NVDLYLPST 204
           V +QRV ++C  +W  C I+SA +   V +Y P T
Sbjct: 157 VTVQRVLIICGGMWVSCSIFSAVTLYGVHVYHPVT 191


>SB_19726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 260 SMCWIWSACSNVDLYLPSTWTRI 192
           SMC +++ C N+ L++P T+  I
Sbjct: 121 SMCTVYNVCKNIPLHIPQTFLHI 143


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 249 PAHAPDSVAKQ--GDPLYLHPHTVLITKSGVIQLTMKSKXPYAIELQEW 389
           P+  P S A Q    PL  HPH  + ++   + +T     P A ++Q W
Sbjct: 622 PSGQPQSTAPQQPSQPLRPHPHQQMNSQMQNLHITSSQAQPNAPQMQGW 670


>SB_22003| Best HMM Match : Ank (HMM E-Value=1.8e-39)
          Length = 304

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 510 CHRQFLRQIVNFGNNIICIHFNGRRVLAPCIALE 409
           CH   +R +V  G ++ C+ F G  V+  C +L+
Sbjct: 216 CHNDAVRLLVECGASVDCLDFTGFSVIRRCQSLQ 249


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 249 PAHAPDSVAKQGDPLYLHPHTVLITKSGVIQLTMKSKXPYAIELQEWL-LEEVIP-QVLC 422
           P +    + K   P   HP TVLI    +I L + +     I LQ  L L+ +IP QVL 
Sbjct: 316 PLYKSSPLYKSSPPTSTHPSTVLIPLQVLIPLQVLTPLQVLIPLQVLLPLQVLIPLQVLI 375

Query: 423 TXQVRA 440
              V A
Sbjct: 376 PLHVLA 381


>SB_45993| Best HMM Match : TEP1_N (HMM E-Value=0.48)
          Length = 369

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 328 DLVMSTVCGCKYSGSPCFATLSGACAG 248
           D+VM TV GC+YS S  + +L   C G
Sbjct: 248 DVVMRTVRGCRYSDS-AWMSLCAQCVG 273


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,577,908
Number of Sequences: 59808
Number of extensions: 443488
Number of successful extensions: 1083
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)