Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120914.seq
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08630.1 68418.m01026 DDT domain-containing protein low simil... 30 1.5
At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-contain... 29 3.5
At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-contain... 29 3.5
At2g02790.1 68415.m00222 calmodulin-binding family protein very ... 28 4.7
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P... 28 6.2
At4g25320.1 68417.m03643 DNA-binding protein-related contains Pf... 28 6.2
At1g77830.1 68414.m09068 zinc finger (C3HC4-type RING finger) fa... 28 6.2
At1g70420.1 68414.m08102 expressed protein 28 6.2
At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3... 27 8.2
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote... 27 8.2
At1g73070.1 68414.m08449 leucine-rich repeat family protein cont... 27 8.2
>At5g08630.1 68418.m01026 DDT domain-containing protein low
similarity to SP|Q9NRL2 Bromodomain adjacent to zinc
finger domain protein 1A (ATP-utilizing chromatin
assembly and remodeling factor 1) (ATP-dependent
chromatin remodelling protein) (Williams syndrome
transcription factor-related chromatin remodeling factor
180) {Homo sapiens}; contains Pfam profile PF02791: DDT
domain
Length = 723
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = +1
Query: 376 NYKNGFWRRSFLKCYARXKYAPAVEMDTNDVIAKIDDLTQKLTVATQIWRKQPIAHFVCQ 555
++K + R+FLK + R ++ ND +AK ++T+K+ Q V Q
Sbjct: 170 SWKKFPFSRNFLKSFIRDSTCHSIPWVVNDYLAKAHEITRKIPKELQNKYVFQNGELVQQ 229
Query: 556 RNDCGSTRR*NGLGQDCENAR 618
R T R N + EN +
Sbjct: 230 RKQEDKTGRENRKRKRAENGK 250
>At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to rho-GTPase activating protein [Homo
sapiens] GI:14245732; contains Pfam profiles PF00169: PH
domain, PF00620: RhoGAP domain
Length = 870
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +1
Query: 58 QVKIGEFKFGEDTFTLRYVLGDEQPVRFVAKDIASSLKYVNCERAIR 198
Q G F DT +Y+ RF+ +D S+L YVN ER R
Sbjct: 691 QTHFGSFSDARDTH--QYLQNHNPQKRFLQQDFDSTLAYVNHERKQR 735
>At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to rho-GTPase activating protein [Homo
sapiens] GI:14245732; contains Pfam profiles PF00169: PH
domain, PF00620: RhoGAP domain
Length = 822
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +1
Query: 58 QVKIGEFKFGEDTFTLRYVLGDEQPVRFVAKDIASSLKYVNCERAIR 198
Q G F DT +Y+ RF+ +D S+L YVN ER R
Sbjct: 691 QTHFGSFSDARDTH--QYLQNHNPQKRFLQQDFDSTLAYVNHERKQR 735
>At2g02790.1 68415.m00222 calmodulin-binding family protein very low
similarity to SP|P12036 Neurofilament triplet H protein
{Homo sapiens}; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 636
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +2
Query: 185 NGQYVSTSTASTNRRLSMPTKSSTCSR*RG--KAGR--PAVFAPTHSAHYQI 328
NG S +T ++RR S+P K + G ++GR P+ APT SA +I
Sbjct: 472 NGNVASENTKPSDRRASLPAKIENHHQDDGLTQSGRKIPSYMAPTASAKARI 523
>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family
Length = 457
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 184 ERAIRVHVDGKYKST-FEHADQIQHMLQIAWQSRATRCICTHTQCSLP 324
E AI + KYK+ F H + + H L + R C C + SLP
Sbjct: 77 EDAISEFIKSKYKNLPFAHTNLLSHHLAKLVEKREILCDCNNDCYSLP 124
>At4g25320.1 68417.m03643 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 404
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 203 TSTASTNRRLSMPTKSSTCSR*RGKAGRPAVFAP 304
T A+T L+MPT++++ + + K GRP + P
Sbjct: 64 TENAATPFSLTMPTENTSAEQLKKKRGRPRKYNP 97
>At1g77830.1 68414.m09068 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 646 GWPSCARFRGARFRNLARARFSVASSHNHFV 554
GW +C RFR R+ R R S A FV
Sbjct: 33 GWHTCERFRLTRYTGQGRGRGSKAGLSKAFV 63
>At1g70420.1 68414.m08102 expressed protein
Length = 272
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 185 NGQYVSTSTASTNRRLSMPTKSSTCSR*RGKAGRPAVFAPTHSAHYQIW 331
NG ++ST+ST RLS KSS + + K + T SAH +++
Sbjct: 187 NGSSSTSSTSSTAARLSGVVKSSEKGKEKTKTDKKKDKMRTKSAHEKLY 235
>At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3)
family protein contains Pfam profile: PF05879 root hair
defective 3 GTP-binding protein (RHD3) family
Length = 834
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 610 FRNLARARFSVASSHNHFVGKQNERSVASAKSALPPS 500
F +L S ASSHN VG + +S+ +PP+
Sbjct: 606 FSSLMDGTVSAASSHNRSVGTSTDPLASSSWEEVPPN 642
>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
beta-ketoacyl-CoA synthase - Simmondsia
chinensis,PID:g1045614
Length = 451
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 261 PDSVAKQGDPLYLHPHTVLITKSGVIQLTMKSK--XPYAIELQEWLLEE 401
P SV Y P + ITKS I+L MKS AIELQ +L++
Sbjct: 85 PSSVFLLDFSCYRPPDHLKITKSDFIELAMKSGNFNETAIELQRKVLDQ 133
>At1g73070.1 68414.m08449 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to receptor-like
protein kinase INRPK1 [Ipomoea nil]
gi|14495542|gb|AAB36558
Length = 598
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 600 LPEPVSASRRATIISLANKMSDRLLPPNLRCHRQFLRQIVNF-GNN 466
LPE ++ + I++L N ++PPNL + +I++F GNN
Sbjct: 401 LPEEITKLKNLKIVTLFNNSFYGVIPPNLGLNSNL--EIIDFIGNN 444
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,996,467
Number of Sequences: 28952
Number of extensions: 295004
Number of successful extensions: 750
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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