Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120912.seq
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.14 
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.3  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = +3

Query: 96  PPGGGHTNIFDSEPEPPRTGRXAVPPSATSTFSXGQGDEPKATNGTSVATN 248
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTS 342



 Score = 31.1 bits (67), Expect = 0.14
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = +3

Query: 96  PPGGGHTNIFDSEPEPPRTGRXAVPPSATSTFSXGQGDEPKATNGTSVATN 248
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTS 396


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +1

Query: 91  SAPPVVATLTSSIPNRSHRGPGAVPFHQAQRALSATDKEMSRKXPTAL 234
           + P  +A  TS+IPN    GP   P  Q  +  S   K  S+  P AL
Sbjct: 16  AVPKSLAGSTSNIPNELFVGPDGRPLSQNAQGAS---KSSSKVVPQAL 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,871
Number of Sequences: 5004
Number of extensions: 36671
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)