Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120912.seq
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0519 - 34481751-34482722 32 0.34
07_03_1136 + 24218601-24218734,24218769-24219906 29 2.4
01_01_0219 + 1863478-1864041,1864459-1865109 29 2.4
01_02_0108 - 11200964-11201338 29 4.2
03_03_0142 + 14800317-14801240 28 5.5
01_07_0082 - 40965947-40967023 28 5.5
12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356 28 7.3
10_08_0271 - 16382655-16384451 28 7.3
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325... 28 7.3
03_02_0258 + 6915645-6915785,6915950-6916020,6916157-6916337,691... 28 7.3
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 28 7.3
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 27 9.7
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795... 27 9.7
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 27 9.7
>03_06_0519 - 34481751-34482722
Length = 323
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 85 GCSAPPVVATLTSSIPNRSHRGPGAVPFHQAQRALSATDKEMSRK 219
G APP ++ T + RS R GA P H A+ S+T+ S +
Sbjct: 28 GAEAPPATSSSTPTTARRSKRLAGAPPDHPAEAGPSSTNARRSSR 72
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/33 (51%), Positives = 17/33 (51%)
Frame = -3
Query: 172 GGTAXRPVLGGSGSESKMLVWPPPGGRSTLLDR 74
GG A R VLGG G L PP GGR L R
Sbjct: 140 GGGAPRRVLGGGGG-GGALARPPGGGRGGALGR 171
>01_01_0219 + 1863478-1864041,1864459-1865109
Length = 404
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 187 VLVALGGTAXRPVLGGSGSESKMLVWPPPGGRSTLLDRRAPSLRPT 50
+L +L ++ RP++ S S VWPPP ST +P PT
Sbjct: 46 MLHSLVPSSSRPIMQPSPSPETPCVWPPPLPSSTPTPAPSPPSTPT 91
>01_02_0108 - 11200964-11201338
Length = 124
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +3
Query: 30 MTSTPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRXAVPPSATST 188
M ST NVGL+ A +S ++RP G +F P R G AV S +T
Sbjct: 1 MASTLTNVGLSTPAAAASSLVRPVAGAGRVVF---PRVGRGGFAAVRASGPAT 50
>03_03_0142 + 14800317-14801240
Length = 307
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 135 PEPPRTGRXAVPPSATSTFSXGQGDEPKATNGTSV 239
P P R G A P+A +T G E +T GTS+
Sbjct: 198 PPPARKGLSACNPAAATTTPGGAAAESASTAGTSL 232
>01_07_0082 - 40965947-40967023
Length = 358
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 96 PPGGGHTNIFDSEPEPPRTGRXAVPPSATSTFSXGQGDEPKATNG 230
PP G+ + ++P PP+ G PP + + G G P+A G
Sbjct: 257 PPQYGYG--YPAQPPPPQAGYGYPPPPPQAGYGGGYGYPPQAGYG 299
>12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356
Length = 480
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 226 LVAFGSSPCPXLKVLVALGGTAXRPVLGGSGSESKMLVWPPPGGRSTLL 80
+VA+ S+P P K +A GG R S ++ K + P G+S ++
Sbjct: 129 IVAYESTPLPPEKTTIAAGGGDARKKKDVSVTKGKKPIKSSPHGKSKIV 177
>10_08_0271 - 16382655-16384451
Length = 598
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 72 RLSSRVLRPPGGGHTNIFDSEPEPPRTGRXAVPPS 176
R +S V R GGG T+ P PP G A P S
Sbjct: 64 RKASPVDRGGGGGGTSFSGHSPSPPDAGGSAKPES 98
>09_06_0172 +
21329904-21331512,21331595-21331740,21332333-21332556,
21333689-21334448
Length = 912
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +3
Query: 135 PEPPRTGRXAVPPSATSTFSXGQGDEPKATNGTSVATNG 251
P PP A PP S + G G P G +VA G
Sbjct: 167 PPPPYGSGYAPPPPYGSGYGYGYGPAPDYGGGMAVANGG 205
>03_02_0258 +
6915645-6915785,6915950-6916020,6916157-6916337,
6916461-6916643,6916753-6916884,6916986-6917084,
6917381-6917593,6917746-6917858,6917959-6918073
Length = 415
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Frame = -1
Query: 282 CGSGLSLGV-------ADRWSLLKCRWXLS 214
CG G LG+ RWSLL+CRW S
Sbjct: 33 CGGGGGLGLRGALPTAGGRWSLLQCRWRSS 62
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 129 SEPEPPRTGRXAVPPSATSTFSXGQ--GDEPKATNGTSVATNG 251
S P PP + VPPS T+ + GQ EP+ G + G
Sbjct: 94 SPPPPPPSSPPPVPPSPTAAPTTGQSWNSEPERKEGATATDVG 136
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 76 YQAGCSAPPVVATLTSSIPNRSHRGPGAVPFHQAQRALS 192
Y+A CSA P + T +++ R+ R AV R+LS
Sbjct: 33 YEAACSADPELGTFDTALRRRASRAITAVASGVEVRSLS 71
>05_03_0065 -
7953414-7953845,7953963-7954081,7954158-7955990,
7957103-7957559
Length = 946
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = -2
Query: 638 PDNTTLNHFKRPKSETHIVLSIFDHNCRILK---GQP 537
PD + + R KS T V++I DH+ R + GQP
Sbjct: 91 PDEEKIRYIGRSKSTTQNVMAICDHDMRFIYASIGQP 127
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 138 EPPRTGRXAVPPSATSTFSXGQGDEPKATNGTSVATN 248
+ P+ G A P A STF Q P ATN +++ N
Sbjct: 586 QAPQAG--APYPQAASTFPHSQASHPAATNPSTIPQN 620
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,391,240
Number of Sequences: 37544
Number of extensions: 298784
Number of successful extensions: 1060
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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