Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120912.seq
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31889| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)                28   7.5  
SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)               27   9.9  

>SB_31889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 427 RTAPVGCESVQSNLRFSFNSHYVT-NMYQAKFFLRYAS 537
           R+  + C SV     FSFN H+V  + Y++ F +++ S
Sbjct: 85  RSTHIMCCSVDMKAHFSFNLHHVLFSGYESAFLVQFTS 122


>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
          Length = 635

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +3

Query: 75  LSSRVLRPPGGGHTNIFDSEPEPPRTGRXAVPPSATSTFSXGQGDEPK 218
           L+S + R P G    +F   P+ PR    + P  ++     G   +P+
Sbjct: 522 LASCISRKPSGSSRRVFPGNPQDPRVVFFSKPSGSSRRVFPGNPQDPR 569


>SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)
          Length = 754

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +3

Query: 87  VLRPPGGGHTNIFDSEPEPPRTGRXAVPPSAT 182
           V   P       F  E EPP+  R   PPS T
Sbjct: 318 VTTSPSNARRRFFGFETEPPQASRQCSPPSRT 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,851,991
Number of Sequences: 59808
Number of extensions: 294744
Number of successful extensions: 777
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)