Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120912.seq
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    32   0.40 
AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical ...    27   0.53 
U23484-9|AAC46771.1|  304|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 22/79 (27%), Positives = 34/79 (43%)
 Frame = +3

Query: 12  DK*KNKMTSTPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRXAVPPSATSTF 191
           +K KN   +  FN   N G + +     P     T++ ++   PP+TGR  + P+  + F
Sbjct: 287 NKYKNNYKAPEFNNDFNGGNKFNQ--FPPRNAQSTDLSENRAAPPQTGRKTLMPTPQAPF 344

Query: 192 SXGQGDEPKATNGTSVATN 248
              Q      TNG S   N
Sbjct: 345 ---QNAPAPFTNGPSDDVN 360


>AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical
           protein Y56A3A.6 protein.
          Length = 798

 Score = 26.6 bits (56), Expect(2) = 0.53
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 141 PPRTGRXAVPPSATSTFSXGQGDEPKATNGTSVAT 245
           PP T R + PPSATS+      DE   T G+ V T
Sbjct: 66  PPGTVRASFPPSATSSVVSDGSDE---TAGSVVVT 97



 Score = 23.4 bits (48), Expect(2) = 0.53
 Identities = 16/48 (33%), Positives = 18/48 (37%)
 Frame = +3

Query: 21  KNKMTSTPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRXA 164
           K K T  P     ND    S+R   PP    T +      PPR G  A
Sbjct: 14  KKKTTPAPAAPPPND----SNRTTPPPSSEETAVVPEPVMPPRKGSVA 57


>U23484-9|AAC46771.1|  304|Caenorhabditis elegans Hypothetical
           protein EEED8.11 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
 Frame = +3

Query: 93  RPPG---GGHTNIFDSEPEPPRT----GRXAVPPSATSTFSXGQGDEPKATNGTSVATNG 251
           RPP    GGH N  D   +PP++          P+ T+T +      P  T  T+  T  
Sbjct: 34  RPPSSYHGGHHNDDDCTTKPPKSTSTPSTSTSTPTTTTTTTTTTTTTPTTTTTTTTTTTP 93

Query: 252 QP 257
           +P
Sbjct: 94  EP 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,617,714
Number of Sequences: 27780
Number of extensions: 233370
Number of successful extensions: 706
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)