Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120912.seq
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02970.1 68416.m00292 phosphate-responsive 1 family protein s...    29   3.5  
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ...    28   6.1  

>At3g02970.1 68416.m00292 phosphate-responsive 1 family protein
           similar to phi-1 (phosphate-induced gene) [Nicotiana
           tabacum] GI:3759184; contains Pfam profile PF04674:
           Phosphate-induced protein 1 conserved region
          Length = 332

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +3

Query: 27  KMTSTPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRXAVPPSATSTFS 194
           K  +TP+N  +      SS  +  P    T +F S   P  TGR  V P     F+
Sbjct: 251 KSETTPYNDDVKKNHESSSMYIVDPATKCTRVFGSGAFPGFTGRIRVDPITGGAFN 306


>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 287

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 40  HHSTLASMTELVYQAGCS-APPVVATLTSSIPNRSHRGPGAVPFHQAQRALSATD 201
           HH   +S + LVY +  S APP+   L+SS    S   P  VP  + +   +A +
Sbjct: 223 HHQRFSSPSFLVYPSNSSFAPPLQGVLSSS--TESEAVPQQVPAAEGEATTTAPE 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,803,034
Number of Sequences: 28952
Number of extensions: 214932
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)