Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120911.seq
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.8  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   7.2  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    25   7.2  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   7.2  

>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 109 YPLLGSTEIVPAGTGVMKISVSYDTTL 29
           YP++G   ++ AGTG M I++ YDT +
Sbjct: 418 YPMIGGWIVLLAGTGSM-IAIYYDTPI 443


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 389 SIGW*NKRTLVRCPLIGSTEQGSITQMSSSLKVSAVK 499
           S+G  ++ TL R P I S    S+T+ S SL    ++
Sbjct: 214 SLGSSSRPTLTRTPSITSRSVNSVTERSKSLSKGRIE 250


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 109 YPLLGSTEIVPAGTGVMKISVSYDTTL 29
           YP++G   ++ AGTG M I++ Y+T +
Sbjct: 418 YPMIGGWIVLLAGTGSM-IAIYYNTDI 443


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 271 ERLLATFSVHMLRLRRVDYKYFWGRRDHTE 182
           ER    F++ MLRL   +  Y+W  + ++E
Sbjct: 235 ERWYVLFNITMLRLVSFNMDYYWSLKHNSE 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,630
Number of Sequences: 5004
Number of extensions: 56981
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)