Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120911.seq
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0485 + 24133312-24133585,24136352-24136492,24136593-241367... 31 0.80
07_03_0980 + 23107348-23107420,23107876-23108025,23108875-231090... 29 2.4
03_02_0057 - 5312812-5312852,5313061-5313201,5314159-5314345 29 2.4
08_02_1257 - 25646029-25646054,25646139-25646236,25646609-256467... 29 3.2
04_01_0343 - 4481651-4482553,4485144-4485857 29 3.2
07_01_1153 - 10842259-10842390,10843348-10845315 29 4.2
04_01_0286 + 3800617-3801720,3801945-3801989,3802063-3802203,380... 29 4.2
02_04_0583 + 24078766-24079800,24080585-24081643 29 4.2
10_08_0819 - 20803992-20804493,20804578-20804759,20804849-208049... 28 7.4
08_02_0481 + 17636359-17636593,17638136-17638278,17638431-176385... 27 9.8
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 27 9.8
>11_06_0485 +
24133312-24133585,24136352-24136492,24136593-24136742,
24136837-24136955,24137062-24137146,24137218-24137264,
24137422-24137520
Length = 304
Score = 31.1 bits (67), Expect = 0.80
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = -1
Query: 345 DLLLPVFNR-HTAETGM---IRQSDRTVANACLRRLACTC*GCVVWITNISGAAETT 187
D +LPV N+ T+ G IR D V N R+ GCVVWIT +SG+ ++T
Sbjct: 87 DDVLPVLNKLMTSTVGKSTNIRWHDCPV-NQLDRQKLLNQKGCVVWITGLSGSGKST 142
>07_03_0980 +
23107348-23107420,23107876-23108025,23108875-23109024,
23109166-23109284,23109384-23109468,23109927-23109973,
23110511-23110609
Length = 240
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -1
Query: 234 GCVVWITNISGAAETT 187
GCVVWIT +SG+ ++T
Sbjct: 63 GCVVWITGLSGSGKST 78
>03_02_0057 - 5312812-5312852,5313061-5313201,5314159-5314345
Length = 122
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 234 GCVVWITNISGAAETTPS 181
GCV+WIT +SG+ PS
Sbjct: 98 GCVIWITGLSGSVRFLPS 115
>08_02_1257 -
25646029-25646054,25646139-25646236,25646609-25646700,
25646786-25646893,25647212-25647346,25647648-25647752,
25647951-25648088,25648865-25648963,25649079-25649195,
25649446-25649610,25649955-25650014,25650395-25650559,
25650636-25650746,25651220-25651333,25651466-25651531,
25651857-25651994,25652303-25652386,25652468-25652510,
25652621-25652676,25652772-25652880,25652944-25653026,
25653127-25653210,25653383-25653454,25653557-25653634,
25653717-25653800,25653892-25653962,25654095-25654164,
25654314-25654403,25654500-25654661,25654702-25654817,
25654946-25654988,25655069-25655185,25655897-25656046
Length = 1082
Score = 29.1 bits (62), Expect = 3.2
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Frame = -2
Query: 458 STLVRWTRLAGNAQGYAYFTIQSTKVSTESTDAIVRSLTC----YCPCLIDTPPKRA*LD 291
S+ W L G+ Q + K S E D SL C YCPC I+ PK D
Sbjct: 628 SSCKSWLALDGSVQPMSAEKYNECKKSIE--DMATSSLRCVAFAYCPCEIERIPKEDIAD 685
Query: 290 -KATAPSRTLACDV 252
K TL C V
Sbjct: 686 WKLPEDDLTLLCIV 699
>04_01_0343 - 4481651-4482553,4485144-4485857
Length = 538
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 438 PISGQRTRVRLFHHPIDKGVNGINGCNCPVS 346
P+ ++ F +P+ KG G+ GCN P S
Sbjct: 363 PLENGNRKLSYFCNPVGKGREGVCGCNLPGS 393
>07_01_1153 - 10842259-10842390,10843348-10845315
Length = 699
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 128 FVTELVGI-RLKHHIRVGKLGVVSAAPEIFVIHTTQP 235
FV E+V I RL+HH V LG E+F+++ P
Sbjct: 390 FVAEIVSIGRLQHHNLVQLLGYCRRRGELFLVYDYMP 426
>04_01_0286 +
3800617-3801720,3801945-3801989,3802063-3802203,
3802368-3802397,3802519-3803025
Length = 608
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +1
Query: 88 LLNLATGTKSLDTVRD*VGWHSLETPHPRRKTRC---GLCGPRNICNPHDATL-TCAR*T 255
L++++ TK L V + W ET + K C +CGP ICN + TL C +
Sbjct: 246 LIDVSGLTKQLLWVEELQDW---ETVFIKPKASCDVSSVCGPYTICNDNALTLCNCMKGF 302
Query: 256 SQASVRD 276
S S RD
Sbjct: 303 SVKSPRD 309
>02_04_0583 + 24078766-24079800,24080585-24081643
Length = 697
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 130 ERYQAILYPLLGSTEIVPAGTGVMKISVSYDTTLKD 23
E Y ++YPLL + IVP ++ S+ T++D
Sbjct: 327 ELYLKVIYPLLEGSTIVPYVAEILLADESFGATIRD 362
>10_08_0819 -
20803992-20804493,20804578-20804759,20804849-20804911,
20805736-20805846,20806668-20806721,20807040-20807075,
20807356-20807400,20807473-20807562,20807863-20808195
Length = 471
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 459 IDPCSVDPISGQRTRVRLFHHPIDKGVNGINGCNCPVSDLLLPVF 325
I PC D + G R R L + + GV CN P SDLL+ F
Sbjct: 292 IGPCIWD-VDGSRNRPDLLNGMENHGVCISLACNPPSSDLLVASF 335
>08_02_0481 +
17636359-17636593,17638136-17638278,17638431-17638550,
17638916-17639116
Length = 232
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -3
Query: 298 D*TKRPHRRERLLATFSVHMLRLRRVDYKY-FWGRRDHTEFSDADVVFQ 155
D + RE++ TF++H + + KY WG A VV+Q
Sbjct: 167 DENRTSEEREKMGQTFTIHYFNYEKENQKYLIWGLTARILIHAASVVYQ 215
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 198 AETTPSFPTRMWCFKRMPTNSVT 130
+ET S P + +C+KR PTN+ T
Sbjct: 511 SETGGSEPGKRFCYKRFPTNART 533
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,910,105
Number of Sequences: 37544
Number of extensions: 411702
Number of successful extensions: 980
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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