Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120911.seq
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30752| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_21268| Best HMM Match : DnaJ_CXXCXGXG (HMM E-Value=3.7)             31   0.62 
SB_9042| Best HMM Match : TNFR_c6 (HMM E-Value=7.8)                    31   0.62 
SB_10144| Best HMM Match : Extensin_2 (HMM E-Value=0.79)               29   3.3  
SB_38981| Best HMM Match : APS_kinase (HMM E-Value=0)                  29   4.3  
SB_8045| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_30752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 163 PHPRRKTRCGLCGPRNICNPHDATLTC 243
           PH RRKTRC  C   +IC    A   C
Sbjct: 516 PHNRRKTRCRECNGGSICEHRRARYVC 542


>SB_21268| Best HMM Match : DnaJ_CXXCXGXG (HMM E-Value=3.7)
          Length = 185

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 163 PHPRRKTRCGLCGPRNICNPHDATLTC 243
           PH RRKTRC  C   +IC    A   C
Sbjct: 41  PHNRRKTRCRECNGGSICEHRRARYVC 67


>SB_9042| Best HMM Match : TNFR_c6 (HMM E-Value=7.8)
          Length = 125

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 163 PHPRRKTRCGLCGPRNICNPHDATLTC 243
           PH RRKTRC  C   +IC    A   C
Sbjct: 47  PHNRRKTRCRECNGGSICEHRRARYVC 73


>SB_10144| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
          Length = 701

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 3   IENGNRISFNVVSYDTEIFMTPVPAGTISVEP 98
           IE  NRI+ NV SYD E    P+  G+I + P
Sbjct: 321 IEKQNRININVFSYDNE-KPYPIYKGSIHIRP 351


>SB_38981| Best HMM Match : APS_kinase (HMM E-Value=0)
          Length = 578

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 234 GCVVWITNISGAAETTPS 181
           GC VW T +SGA +TT S
Sbjct: 76  GCSVWFTGLSGAGKTTLS 93


>SB_8045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -2

Query: 158 SSECQPTQS-RTVSSDFVPVARFN 90
           S  C P +S RT+SS+FVP+A  N
Sbjct: 77  SPHCTPLKSTRTMSSEFVPLAEVN 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,109,195
Number of Sequences: 59808
Number of extensions: 492698
Number of successful extensions: 1150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)