Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120911.seq
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39940.1 68417.m05656 adenylylsulfate kinase 2 (AKN2) identic...    30   1.5  
At3g03900.1 68416.m00404 adenylylsulfate kinase, putative simila...    29   2.0  
At1g31650.1 68414.m03886 expressed protein contains Pfam profile...    29   2.0  
At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family...    29   2.7  
At2g14750.1 68415.m01666 adenylylsulfate kinase 1 (AKN1) identic...    29   3.5  
At5g65000.2 68418.m08176 nucleotide-sugar transporter family pro...    28   4.7  
At5g65000.1 68418.m08175 nucleotide-sugar transporter family pro...    28   4.7  
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ...    28   4.7  
At5g67520.1 68418.m08514 adenylylsulfate kinase, putative simila...    27   8.2  
At1g50920.1 68414.m05725 GTP-binding protein-related similar to ...    27   8.2  

>At4g39940.1 68417.m05656 adenylylsulfate kinase 2 (AKN2) identical
           to adenylylsulfate kinase 2, chloroplast precursor (APS
           kinase, Adenosine-5'phosphosulfate kinase, ATP
           adenosine-5'- phosphosulfate 3'-phosphotransferase)
           [Arabidopsis thaliana] SWISS-PROT:O49196
          Length = 293

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 234 GCVVWITNISGAAETTPSFPTRMWCFKR 151
           GCVVWIT +SG+ ++T +       F+R
Sbjct: 115 GCVVWITGLSGSGKSTVACALSKALFER 142


>At3g03900.1 68416.m00404 adenylylsulfate kinase, putative similar
           to adenylylsulfate kinase 1, chloroplast precursor (APS
           kinase, Adenosine-5'phosphosulfate kinase, ATP
           adenosine-5'- phosphosulfate 3'-phosphotransferase)
           [Arabidopsis thaliana] SWISS-PROT:Q43295
          Length = 208

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 234 GCVVWITNISGAAETT 187
           GCVVWIT +SG+ ++T
Sbjct: 30  GCVVWITGLSGSGKST 45


>At1g31650.1 68414.m03886 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 576

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 207 SGAAETTPSFPTRMWCFKRMPTNS 136
           S +  TTPS  +R+WC  ++P+++
Sbjct: 551 SNSVNTTPSRSSRLWCLSKVPSDT 574


>At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family
           protein identical to gi|4775268|emb|CAB42531
          Length = 150

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 628 ADTETPXLPFRAPCAT*CTTRASFPRA--PCADGP 530
           A T+ P  P +AP A   ++ AS P+A  P A+GP
Sbjct: 44  ATTKAPSAPTKAPAAAPKSSSASSPKASSPAAEGP 78


>At2g14750.1 68415.m01666 adenylylsulfate kinase 1 (AKN1) identical
           to adenylylsulfate kinase 1, chloroplast precursor (APS
           kinase, Adenosine-5'phosphosulfate kinase, ATP
           adenosine-5'- phosphosulfate 3'-phosphotransferase)
           [Arabidopsis thaliana] SWISS-PROT:Q43295
          Length = 276

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -1

Query: 234 GCVVWITNISGAAETT 187
           GCV+W+T +SG+ ++T
Sbjct: 101 GCVIWVTGLSGSGKST 116


>At5g65000.2 68418.m08176 nucleotide-sugar transporter family
           protein low similarity to SP|Q9Y2D2 UDP
           N-acetylglucosamine transporter {Homo sapiens}; contains
           Pfam profile PF04142: Nucleotide-sugar transporter
          Length = 260

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 254 RRKQAFATVRSLCLIMPVSAVCRLNTGSNRSETG 355
           R+KQ+   + +LCL++  + +  +  GSN+  +G
Sbjct: 132 RQKQSILQIGALCLLIMAAVLLSVGEGSNKDSSG 165


>At5g65000.1 68418.m08175 nucleotide-sugar transporter family
           protein low similarity to SP|Q9Y2D2 UDP
           N-acetylglucosamine transporter {Homo sapiens}; contains
           Pfam profile PF04142: Nucleotide-sugar transporter
          Length = 325

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 254 RRKQAFATVRSLCLIMPVSAVCRLNTGSNRSETG 355
           R+KQ+   + +LCL++  + +  +  GSN+  +G
Sbjct: 132 RQKQSILQIGALCLLIMAAVLLSVGEGSNKDSSG 165


>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
           XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
          Length = 1020

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 197 QRPHRVFRRGCGVSSECQPTQSRTVSSDFVPVARFNRNR 81
           ++  RV R   G +++    ++ TV  D VPVARF+ +R
Sbjct: 414 RQAERVKRDKAGKATKRMDDEAPTVQPDLVPVARFSGSR 452


>At5g67520.1 68418.m08514 adenylylsulfate kinase, putative similar
           to adenylylsulfate kinase, chloroplast precursor (APS
           kinase, Adenosine-5'phosphosulfate kinase, ATP
           adenosine-5'- phosphosulfate 3'-phosphotransferase)
           [Catharanthus roseus] SWISS-PROT:O49204
          Length = 310

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -1

Query: 234 GCVVWITNISGAAETT 187
           GCV+WIT +SG+ +++
Sbjct: 109 GCVIWITGLSGSGKSS 124


>At1g50920.1 68414.m05725 GTP-binding protein-related similar to
           GTP-binding protein SP:Q99ME9 from [Mus musculus]
          Length = 671

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 514 MIQTNLGRLRTAPAGKKLSSCITSRTVRGT 603
           M+Q N  R+   P GK+    I SRT R T
Sbjct: 1   MVQYNFKRITVVPNGKEFVDIILSRTQRQT 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,826,157
Number of Sequences: 28952
Number of extensions: 312266
Number of successful extensions: 717
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)