Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120910.seq
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    27   2.3  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    27   3.1  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    26   4.0  
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    26   5.3  
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p...    25   7.1  

>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
 Frame = +2

Query: 50  SNLDALTLQYWPDVDRDIFCNVNKQIRAPYS----------YNYKGTKFSRCITKELLDK 199
           S ++   LQ WPDV   +F +   ++  P S          ++Y+GTK    +    L K
Sbjct: 267 SRINQAVLQKWPDVSLYVFGSFETKLYLPTSDLDLVIISPEHHYRGTKKDMFVLAHHLKK 326

Query: 200 LK 205
           LK
Sbjct: 327 LK 328


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 471 RAQFQDLCKNLLHCRIL 421
           RA+F +LC N+LH R L
Sbjct: 396 RAKFNNLCSNILHFRAL 412


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 321 HINVQQWSHIVKWDSFKCNTHSF 389
           H++V  WS I K+D++     S+
Sbjct: 74  HLSVDSWSSITKYDNYTVENESY 96


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +2

Query: 422 KILQCNRFLQRS*N-CARRHT*LQLGQRSSYHLNEIIFHKQKSKRDLQLRWGALFATKQG 598
           ++LQ   FL+ S       HT +Q+G + +  L        KS   L +RW   FA    
Sbjct: 168 RLLQAQCFLELSDKRFEESHTEIQIGPKFTVVLYTSFSQPSKSDGPLDVRWQETFAKSDL 227

Query: 599 LLK 607
            +K
Sbjct: 228 YIK 230


>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 141 LYGARICLLTLQKISLSTSGQYCNVSASKFESCI 40
           +Y  R CL+    + L    QYC     + ESC+
Sbjct: 82  IYNKR-CLMAYHNLRLQRLRQYCWSGGKRMESCL 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,167
Number of Sequences: 5004
Number of extensions: 47165
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)