Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120910.seq
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032...    34   0.084
07_01_0585 - 4351232-4351336,4352192-4352320                           28   5.5  
09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503     28   7.3  
02_05_1228 + 35086576-35087139,35089125-35089268,35090436-350906...    27   9.7  

>04_03_0686 +
           18701543-18701917,18702658-18702702,18703175-18703289,
           18703644-18703713,18703796-18703844,18704319-18704416,
           18704984-18705122,18705261-18705410
          Length = 346

 Score = 34.3 bits (75), Expect = 0.084
 Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +3

Query: 420 AKFYNVIDFCKGLE-IAHDDILDCNWDR 500
           A+FYNV   C  +E IAHD +LDC+WD+
Sbjct: 306 ARFYNVQPVC--IEGIAHDMMLDCSWDK 331


>07_01_0585 - 4351232-4351336,4352192-4352320
          Length = 77

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 512 GNLISVPIAIKYVVVRNFKTFAKIYYIVEFCV 417
           G  +SVP+A+ Y+V  + KT  K+  + E+ V
Sbjct: 17  GVYVSVPVALTYLVATDSKTLKKLMGLREYVV 48


>09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503
          Length = 685

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 18  PYVCTFRICKIQTWTRSRCSIGRTW 92
           PY  T  + K     R+ CSIGR W
Sbjct: 55  PYAHTIELTKTDISDRNLCSIGRVW 79


>02_05_1228 +
           35086576-35087139,35089125-35089268,35090436-35090600,
           35090722-35090796,35091468-35091671
          Length = 383

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 459 EIAHDDILDCNWDRDQVTI*TKLFFTSRNPN 551
           EI    + D  W R  V + TKLF+  + PN
Sbjct: 61  EIMGQAMRDLGWRRSDVVVSTKLFWGGQGPN 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,330,228
Number of Sequences: 37544
Number of extensions: 286910
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)