Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120910.seq
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10439| Best HMM Match : Metallothio_7 (HMM E-Value=3.6)             34   0.11 
SB_55161| Best HMM Match : Kunitz_BPTI (HMM E-Value=6.3)               31   0.80 
SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)                30   1.9  
SB_17743| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_15426| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6)               29   3.2  
SB_2503| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6)                29   3.2  
SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)                  29   4.3  
SB_2350| Best HMM Match : DUF883 (HMM E-Value=9.1)                     29   4.3  
SB_34049| Best HMM Match : PSI (HMM E-Value=2.6)                       28   5.7  
SB_33000| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_17477| Best HMM Match : PSI (HMM E-Value=1.7)                       28   7.5  
SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06)               28   7.5  
SB_22572| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_10439| Best HMM Match : Metallothio_7 (HMM E-Value=3.6)
          Length = 288

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 408 CARICT*N-CACCI*MNPI*RCATIVGRLC 322
           CAR  T N CACC+ MN   RC T+ G  C
Sbjct: 244 CARCVTMNGCACCVTMNGYPRCVTMNGCAC 273



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 408 CARICT*N-CACCI*MNPI*RCATIVGRLC 322
           CAR  T N CA C+ MN   RC T+ G  C
Sbjct: 226 CARCVTMNGCARCVTMNGCARCVTMNGCAC 255



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 450 CKNLLHC-RILRSCRCARICT*N-CACCI*MNPI*RCATIVG 331
           C  +  C R +    CAR  T N CA C+ MN   RC T+ G
Sbjct: 193 CVTIYDCARCVTMNGCARCVTMNGCARCVTMNGCARCVTMNG 234


>SB_55161| Best HMM Match : Kunitz_BPTI (HMM E-Value=6.3)
          Length = 260

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
 Frame = -3

Query: 498 CPNCNQVCRRAQFQDL--CKNLLHC-RILRSCRCARICT*N-CACCI*MNPI*RCATIVG 331
           C   N   R     D   C  +  C R +    CAR  T N CA C+ MN   RC T+ G
Sbjct: 183 CVTMNGCARCVTMNDCARCVTIYDCARCVTMNGCARCVTMNGCARCVTMNGYPRCVTMNG 242

Query: 330 RLC 322
             C
Sbjct: 243 CTC 245


>SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
          Length = 755

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 450 CKNLLHC-RILRSCRCARICT*N-CACCI*MNPI*RCATIVG 331
           C  +  C R +    CAR  T N CA C+ MN   RC TI G
Sbjct: 687 CVTIYECARCVTMNGCARCVTMNGCARCVTMNGCARCVTING 728



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 408 CARICT*N-CACCI*MNPI*RCATIVGRLC 322
           CAR  T N CA C+ +N   RC T+ G  C
Sbjct: 711 CARCVTMNGCARCVTINGYPRCVTMNGCTC 740


>SB_17743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 408 CARICT*N-CACCI*MNPI*RCATIVGRLC 322
           CAR  T N CA C+ MN   RC T+ G  C
Sbjct: 216 CARCVTMNGCARCVTMNGCPRCVTMNGCTC 245



 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 426 ILRSCRCARICT*NCACCI*MNPI*RCATIVG 331
           + R  RC  +    CACC+ MN   RC T+ G
Sbjct: 168 VTRKKRCVTMN--GCACCVTMNGCSRCVTMNG 197



 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 408 CARICT*N-CACCI*MNPI*RCATIVG 331
           C+R  T N CA C+ MN   RC TI G
Sbjct: 189 CSRCVTMNGCARCVTMNGCARCVTIYG 215


>SB_15426| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6)
          Length = 224

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 408 CARICT*N-CACCI*MNPI*RCATIVG 331
           CAR  T N CA C+ MN   RC TI G
Sbjct: 189 CARCVTMNGCARCVTMNGCARCVTIYG 215



 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 426 ILRSCRCARICT*NCACCI*MNPI*RCATIVG 331
           + R  RC  +    CACC+ MN   RC T+ G
Sbjct: 168 VTRGKRCVTMN--GCACCVTMNGCARCVTMNG 197


>SB_2503| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6)
          Length = 224

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 408 CARICT*N-CACCI*MNPI*RCATIVG 331
           CAR  T N CA C+ MN   RC TI G
Sbjct: 189 CARCVTMNGCARCVTMNGCARCVTIYG 215



 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 426 ILRSCRCARICT*NCACCI*MNPI*RCATIVG 331
           + R  RC  +    CACC+ MN   RC T+ G
Sbjct: 168 VTRGKRCVTMN--GCACCVTMNGCARCVTMNG 197


>SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)
          Length = 831

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 3   ARGERPYVCTFRICKIQTWTRSR 71
           AR   PY  T +ICK + WT+SR
Sbjct: 509 ARHGFPYPPTIKICKSKDWTKSR 531


>SB_2350| Best HMM Match : DUF883 (HMM E-Value=9.1)
          Length = 405

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 5   TRREAVRLYIPHMQDSNLDALTLQYWPDVDRDIF--CNVNKQIR 130
           TR    RLY+PH   +N  ++    +PDV  ++    NV++Q++
Sbjct: 118 TRHNDYRLYMPHRTSANYHSVENIPFPDVPPEVTSKANVSEQVK 161


>SB_34049| Best HMM Match : PSI (HMM E-Value=2.6)
          Length = 279

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -3

Query: 450 CKNLLHC-RILRSCRCARICT*N-CACCI*MNPI*RCATIVGRLC 322
           C  +  C R +    C R  T N CA C+ MN   RC T+ G  C
Sbjct: 185 CVTIYGCARCVTMNGCVRCVTMNGCARCVTMNGCPRCVTMNGCTC 229



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 426 ILRSCRCARICT*NCACCI*MNPI*RCATIVG 331
           I R  RC  I   +CACC+ MN   RC  + G
Sbjct: 143 ITRGKRCVTIN--DCACCVTMNGCARCVIMNG 172


>SB_33000| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +2

Query: 56  LDALTLQYWPDVDRDIFCNVNKQIRAPYSYNYKGTKFSRCITKELLDKLK 205
           L ++  Q WP+V  D+  ++  ++       +KG +      KE++ K+K
Sbjct: 519 LKSIIRQGWPEVKDDVPVSIRDELSLQNGLVFKGERLEGKTAKEVMRKIK 568


>SB_17477| Best HMM Match : PSI (HMM E-Value=1.7)
          Length = 206

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 426 ILRSCRCARICT*NCACCI*MNPI*RCATIVG 331
           + R  RC  +    CACC+ MN   RC T+ G
Sbjct: 96  VTRGKRCVTMN--GCACCVTMNGCSRCVTMNG 125



 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 408 CARICT*N-CACCI*MNPI*RCATIVG 331
           C+R  T N CA C+ MN   RC TI G
Sbjct: 117 CSRCVTMNGCARCVTMNGCARCVTIYG 143



 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 408 CARICT*N-CACCI*MNPI*RCATIVG 331
           CAR  T N C CC+ MN    C TI G
Sbjct: 171 CARCVTMNGCLCCVTMNGCTCCVTING 197


>SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06)
          Length = 167

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -3

Query: 492 NCNQVCRRAQFQDLCKN--LLHCRILRSCRCARI--CT*NC 382
           NC+QV  + Q Q +C N  L   R+ +  +C ++  C+ NC
Sbjct: 114 NCDQVVEQQQQQRMCANCGLAKIRLSKCGKCLKVYYCSRNC 154


>SB_22572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
 Frame = -3

Query: 498 CPNCNQVCRRAQFQDL--CKNLLHC-RILRSCRCARICT*N-CACCI*MNPI*RCATIVG 331
           C   N   R     D   C  +  C R +    C R  T N CA C+ MN   RC T+ G
Sbjct: 460 CVTMNGCARCVTIYDCARCVTMNGCARCVTMNGCPRCVTMNGCAHCVTMNGYPRCVTMNG 519

Query: 330 RLC 322
             C
Sbjct: 520 CTC 522


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,615,235
Number of Sequences: 59808
Number of extensions: 364122
Number of successful extensions: 1152
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)