Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120910.seq
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.63 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    25   0.83 
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    25   0.83 
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    25   0.83 
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    25   0.83 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.1  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   5.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -3

Query: 465 QFQDLCKNLLHCRILRSCRCARICT*NCAC 376
           +++  C  L HC    +C C   C   C C
Sbjct: 738 RYEAHCFALCHCCDFDACDCEMTCPAGCKC 767


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 375 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 464
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 375 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 464
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 375 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 464
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 375 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 464
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 36  RICKIQTWTRSRCSIGRTWTGIFFVTL 116
           ++ K  TWT  R +I +T TG  F+T+
Sbjct: 487 QVIKQNTWTVFRDAITQTGTGPAFLTI 513


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 151 IIIAVRCAYLFVNVTKNIPVHVRPIL 74
           +I  +RC YLF++V       V P++
Sbjct: 1   MISMLRCIYLFLSVILITSYFVTPVM 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,852
Number of Sequences: 438
Number of extensions: 3458
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)