Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120909.seq
(647 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q8SYY6 Cluster: RE27904p; n=8; Coelomata|Rep: RE27904p ... 103 4e-21
UniRef50_Q8MXH3 Cluster: Putative uncharacterized protein T09A12... 85 1e-15
UniRef50_Q7ZUJ1 Cluster: Zgc:56419; n=5; Euteleostomi|Rep: Zgc:5... 82 1e-14
UniRef50_Q9Y6X1 Cluster: Ribosome-attached membrane protein 4; n... 82 1e-14
UniRef50_Q238X7 Cluster: Ribosome associated membrane protein RA... 67 4e-10
UniRef50_Q5BTC1 Cluster: SJCHGC02042 protein; n=1; Schistosoma j... 61 2e-08
UniRef50_A7QP46 Cluster: Chromosome chr1 scaffold_136, whole gen... 60 5e-08
UniRef50_A0D197 Cluster: Chromosome undetermined scaffold_34, wh... 57 4e-07
UniRef50_Q9FZK2 Cluster: F17L21.12; n=13; Magnoliophyta|Rep: F17... 56 1e-06
UniRef50_Q7RG55 Cluster: Arabidopsis thaliana F17L21.12-related;... 55 1e-06
UniRef50_Q5CPN8 Cluster: Putative uncharacterized protein; n=1; ... 52 1e-05
UniRef50_UPI0000E1FFEC Cluster: PREDICTED: similar to ribosome a... 51 2e-05
UniRef50_Q0IRG8 Cluster: Os11g0637400 protein; n=11; Liliopsida|... 51 2e-05
UniRef50_A3CD52 Cluster: Putative uncharacterized protein; n=2; ... 51 2e-05
UniRef50_A5KBT3 Cluster: Ribosome associated membrane protein RA... 51 3e-05
UniRef50_UPI0000D9E6A9 Cluster: PREDICTED: similar to ribosome a... 42 0.010
UniRef50_Q553P6 Cluster: Putative uncharacterized protein; n=1; ... 37 0.48
UniRef50_Q5ATU0 Cluster: Putative uncharacterized protein; n=1; ... 36 0.64
UniRef50_Q4XDR8 Cluster: Putative uncharacterized protein; n=1; ... 35 1.5
UniRef50_Q8ILU2 Cluster: Putative uncharacterized protein; n=2; ... 33 6.0
UniRef50_UPI0000D56160 Cluster: PREDICTED: similar to CG17922-PA... 33 7.9
UniRef50_Q40940 Cluster: Pre-mRNA splicing factor PRP 6 homolog;... 33 7.9
>UniRef50_Q8SYY6 Cluster: RE27904p; n=8; Coelomata|Rep: RE27904p -
Drosophila melanogaster (Fruit fly)
Length = 64
Score = 103 bits (247), Expect = 4e-21
Identities = 46/58 (79%), Positives = 52/58 (89%)
Frame = +3
Query: 81 MAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQII 254
MAP QRMR+ANE ASK +TMRGNVPK++K KE QYPV PWLLALFIFVVCGSA+FQI+
Sbjct: 1 MAPPQRMRVANEKASKYVTMRGNVPKSSKTKEGQYPVGPWLLALFIFVVCGSAIFQIV 58
>UniRef50_Q8MXH3 Cluster: Putative uncharacterized protein T09A12.5;
n=2; Bilateria|Rep: Putative uncharacterized protein
T09A12.5 - Caenorhabditis elegans
Length = 63
Score = 85.4 bits (202), Expect = 1e-15
Identities = 36/58 (62%), Positives = 45/58 (77%)
Frame = +3
Query: 81 MAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQII 254
MAPKQRM +AN SKN+T RGNVPK K E ++P + WL+ LFIFVVCGSA+F++I
Sbjct: 1 MAPKQRMAVANAQFSKNVTQRGNVPKGNKTNESKFPTSQWLIGLFIFVVCGSAIFEVI 58
>UniRef50_Q7ZUJ1 Cluster: Zgc:56419; n=5; Euteleostomi|Rep:
Zgc:56419 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 66
Score = 82.2 bits (194), Expect = 1e-14
Identities = 39/59 (66%), Positives = 49/59 (83%), Gaps = 1/59 (1%)
Frame = +3
Query: 81 MAPKQRMRIANEIASKNITMRGNVPKTTK-EKEDQYPVAPWLLALFIFVVCGSAVFQII 254
M KQR+R+ANE SKNIT+RGNV K+T+ +E++ V PWLLALF+FVVCGSA+FQII
Sbjct: 1 MVAKQRIRMANEKHSKNITLRGNVAKSTRGTQEEKAVVGPWLLALFVFVVCGSAIFQII 59
>UniRef50_Q9Y6X1 Cluster: Ribosome-attached membrane protein 4;
n=33; Eumetazoa|Rep: Ribosome-attached membrane protein
4 - Homo sapiens (Human)
Length = 66
Score = 81.8 bits (193), Expect = 1e-14
Identities = 40/59 (67%), Positives = 47/59 (79%), Gaps = 1/59 (1%)
Frame = +3
Query: 81 MAPKQRMRIANEIASKNITMRGNVPKTTKEK-EDQYPVAPWLLALFIFVVCGSAVFQII 254
M KQR+R+ANE SKNIT RGNV KT++ E++ V PWLLALFIFVVCGSA+FQII
Sbjct: 1 MVAKQRIRMANEKHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQII 59
>UniRef50_Q238X7 Cluster: Ribosome associated membrane protein RAMP4
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: Ribosome associated membrane protein RAMP4
containing protein - Tetrahymena thermophila SB210
Length = 107
Score = 66.9 bits (156), Expect = 4e-10
Identities = 28/56 (50%), Positives = 43/56 (76%)
Frame = +3
Query: 90 KQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIN 257
KQ+M++ + + +KN+T RG VP + K KE++ V PW+L +F+FVV GSA+FQI+N
Sbjct: 48 KQQMKLKSNLHNKNVTNRGKVPSSLKSKEEK-SVGPWVLGIFLFVVVGSAIFQILN 102
>UniRef50_Q5BTC1 Cluster: SJCHGC02042 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC02042 protein - Schistosoma
japonicum (Blood fluke)
Length = 79
Score = 61.3 bits (142), Expect = 2e-08
Identities = 28/59 (47%), Positives = 39/59 (66%)
Frame = +3
Query: 78 KMAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQII 254
+M+ QRM++ N A N+ RGNVPK+ K + Q + +L L +FVVCGSAVF+II
Sbjct: 14 RMSASQRMKVQNGKAHGNVVNRGNVPKSLKSSDSQSNMNACILGLIVFVVCGSAVFEII 72
>UniRef50_A7QP46 Cluster: Chromosome chr1 scaffold_136, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr1 scaffold_136, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 105
Score = 60.1 bits (139), Expect = 5e-08
Identities = 27/43 (62%), Positives = 33/43 (76%)
Frame = +3
Query: 126 KNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQII 254
KNIT RG+VP+TT +K YPV P LL F+FVV GS++FQII
Sbjct: 54 KNITKRGSVPETTTKKGSDYPVGPVLLGFFVFVVIGSSLFQII 96
>UniRef50_A0D197 Cluster: Chromosome undetermined scaffold_34, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_34,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 75
Score = 56.8 bits (131), Expect = 4e-07
Identities = 25/55 (45%), Positives = 38/55 (69%)
Frame = +3
Query: 93 QRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIN 257
Q M++ ++ N+ +G VPK+ +KE+ PV P LL +F+FVV GSA+FQI+N
Sbjct: 13 QTMKLRSQNYQGNVNKQGKVPKSLIKKEENLPVGPILLGVFLFVVVGSALFQILN 67
>UniRef50_Q9FZK2 Cluster: F17L21.12; n=13; Magnoliophyta|Rep:
F17L21.12 - Arabidopsis thaliana (Mouse-ear cress)
Length = 77
Score = 55.6 bits (128), Expect = 1e-06
Identities = 26/43 (60%), Positives = 31/43 (72%)
Frame = +3
Query: 126 KNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQII 254
KNI RG VP+TT +K YPV P LL F+FVV GS++FQII
Sbjct: 26 KNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQII 68
>UniRef50_Q7RG55 Cluster: Arabidopsis thaliana F17L21.12-related;
n=3; Plasmodium|Rep: Arabidopsis thaliana
F17L21.12-related - Plasmodium yoelii yoelii
Length = 67
Score = 55.2 bits (127), Expect = 1e-06
Identities = 27/59 (45%), Positives = 36/59 (61%)
Frame = +3
Query: 81 MAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIN 257
MA +++ E NIT RGNVP + +K +Y V P LL +FIF+V GS V QI+N
Sbjct: 1 MASNRKINKKIETFDNNITNRGNVPTSIAKKGKKYTVGPILLGIFIFIVIGSVVIQILN 59
>UniRef50_Q5CPN8 Cluster: Putative uncharacterized protein; n=1;
Cryptosporidium parvum Iowa II|Rep: Putative
uncharacterized protein - Cryptosporidium parvum Iowa II
Length = 65
Score = 52.0 bits (119), Expect = 1e-05
Identities = 26/58 (44%), Positives = 38/58 (65%)
Frame = +3
Query: 81 MAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQII 254
MA + ++ E+ KNI RG+V ++ +K+ YPV P+ L LFIFVV GSA+ Q+I
Sbjct: 1 MAQSRFTKLKGELYEKNIDKRGSV--SSSKKKSGYPVGPFALGLFIFVVIGSAIIQMI 56
>UniRef50_UPI0000E1FFEC Cluster: PREDICTED: similar to ribosome
attached membrane protein 4; n=1; Pan troglodytes|Rep:
PREDICTED: similar to ribosome attached membrane protein
4 - Pan troglodytes
Length = 231
Score = 51.2 bits (117), Expect = 2e-05
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +3
Query: 153 PKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQII 254
P+ E++ V PWLLALFIFVVCGSA+FQII
Sbjct: 191 PRPRNAPEEKASVGPWLLALFIFVVCGSAIFQII 224
>UniRef50_Q0IRG8 Cluster: Os11g0637400 protein; n=11;
Liliopsida|Rep: Os11g0637400 protein - Oryza sativa
subsp. japonica (Rice)
Length = 573
Score = 51.2 bits (117), Expect = 2e-05
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = +3
Query: 126 KNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGS 236
KNIT RG+VP+TT +K + YPV P +L FIFVV GS
Sbjct: 27 KNITKRGSVPETTVKKGNDYPVGPLVLGFFIFVVIGS 63
>UniRef50_A3CD52 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 460
Score = 51.2 bits (117), Expect = 2e-05
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = +3
Query: 126 KNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGS 236
KNIT RG+VP+TT +K + YPV P +L FIFVV GS
Sbjct: 17 KNITKRGSVPETTVKKGNDYPVGPLVLGFFIFVVIGS 53
>UniRef50_A5KBT3 Cluster: Ribosome associated membrane protein
RAMP4, putative; n=3; Plasmodium|Rep: Ribosome
associated membrane protein RAMP4, putative - Plasmodium
vivax
Length = 102
Score = 50.8 bits (116), Expect = 3e-05
Identities = 24/61 (39%), Positives = 37/61 (60%)
Frame = +3
Query: 75 NKMAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQII 254
+KMA +++ NIT RGNVP + +K ++PV P LL +F+FVV GS Q++
Sbjct: 33 SKMASNRKISQKINAFDNNITHRGNVPASLVKKGKKHPVGPILLVIFVFVVIGSVFIQML 92
Query: 255 N 257
+
Sbjct: 93 S 93
>UniRef50_UPI0000D9E6A9 Cluster: PREDICTED: similar to ribosome
associated membrane protein 4; n=1; Macaca mulatta|Rep:
PREDICTED: similar to ribosome associated membrane
protein 4 - Macaca mulatta
Length = 177
Score = 42.3 bits (95), Expect = 0.010
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = +3
Query: 81 MAPKQRMRIANEIASKNITMRGNVPKTTKE 170
M KQR+R+ANE SKNIT RGNV KT K+
Sbjct: 1 MVAKQRIRMANEKHSKNITQRGNVAKTLKK 30
>UniRef50_Q553P6 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 59
Score = 36.7 bits (81), Expect = 0.48
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +3
Query: 81 MAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQII 254
M+ + +R ++ +NI RG + K+KED + P++L IFVV GS + QI+
Sbjct: 1 MSQSRTLRQKSQKYQENIEKRGVA--SPKKKEDGLNINPYVLGFIIFVVVGSTLLQIL 56
>UniRef50_Q5ATU0 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 78
Score = 36.3 bits (80), Expect = 0.64
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 81 MAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYP-VAPWLLALFIFVVCGSAVFQII 254
M + R ANE +K+ + PKTT K + P ++ + L FVVCG VF+++
Sbjct: 1 MTQTPQQRRANEKFAKHEASKRGKPKTTTTKHNTKPSLSTGWVVLLAFVVCGGLVFELL 59
>UniRef50_Q4XDR8 Cluster: Putative uncharacterized protein; n=1;
Plasmodium chabaudi|Rep: Putative uncharacterized
protein - Plasmodium chabaudi
Length = 495
Score = 35.1 bits (77), Expect = 1.5
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 576 LWLEVVFKNYIEKENKNSSKILHRYLNVPNN 484
LWL F+ YI +NKNS +I + +LN+ N
Sbjct: 396 LWLCGSFEKYINNDNKNSMEIFNHFLNISKN 426
>UniRef50_Q8ILU2 Cluster: Putative uncharacterized protein; n=2;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 1474
Score = 33.1 bits (72), Expect = 6.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 633 KKYSNKKKTITLFITF*WNLWLEVVFKNYIEKENKNSSKILHRYLNVPNN 484
KK N K T + +L+ + + Y++++NKN +K H Y N NN
Sbjct: 178 KKVKNYKNQYTEEKRWKHDLFYDYKYDEYVKRDNKNHNKTYHNYNNNNNN 227
>UniRef50_UPI0000D56160 Cluster: PREDICTED: similar to CG17922-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG17922-PA - Tribolium castaneum
Length = 715
Score = 32.7 bits (71), Expect = 7.9
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 120 ASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIN 257
A+K T G PK T+E E + WL+ +F+F + + II+
Sbjct: 352 ATKTATSIGKNPKPTQEIEYMFMTVSWLMGVFVFALLIGQIRDIIS 397
>UniRef50_Q40940 Cluster: Pre-mRNA splicing factor PRP 6 homolog;
n=2; Bigelowiella natans|Rep: Pre-mRNA splicing factor
PRP 6 homolog - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 686
Score = 32.7 bits (71), Expect = 7.9
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -3
Query: 633 KKYSNKKKTITLFITF*WN---LWLEVVFKNYIEKENKNSSKILHRYLNVPN 487
+ Y N KK I + TF W+ +WL I+ N +KIL RY + N
Sbjct: 188 ENYENSKKLINIARTFNWSNFEIWLTAAQLEEIQGNYTNINKILKRYFYILN 239
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,577,868
Number of Sequences: 1657284
Number of extensions: 12516967
Number of successful extensions: 29758
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 28879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29747
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -