Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120909.seq
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27350.1 68414.m03331 expressed protein contains 1 transmembr...    56   3e-08
At1g27330.1 68414.m03329 expressed protein similar to EST gb|AA6...    56   3e-08
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein...    29   2.0  
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein...    29   2.0  
At1g31960.1 68414.m03929 hypothetical protein                          29   3.5  
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein...    28   4.7  

>At1g27350.1 68414.m03331 expressed protein contains 1 transmembrane
           domain; similar to ribosome associated membrane protein
           RAMP4 GI:4585827 [Rattus norvegicus]; similar to ESTs
           gb|T20610 and gb|AA586199
          Length = 68

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 26/43 (60%), Positives = 31/43 (72%)
 Frame = +3

Query: 126 KNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQII 254
           KNI  RG VP+TT +K   YPV P LL  F+FVV GS++FQII
Sbjct: 17  KNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQII 59


>At1g27330.1 68414.m03329 expressed protein similar to EST
           gb|AA650671 and gb|T20610
          Length = 68

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 26/43 (60%), Positives = 31/43 (72%)
 Frame = +3

Query: 126 KNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQII 254
           KNI  RG VP+TT +K   YPV P LL  F+FVV GS++FQII
Sbjct: 17  KNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQII 59


>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
           similar to zinc finger protein GB:BAA33206 [Oryza
           sativa]
          Length = 372

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 131 HHNEGECTQNYQGKRRPISCGTLAPCSLHLRSVWLCCV 244
           +++    T   Q KR+ ISC +  P S  L S+W  C+
Sbjct: 82  NNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCL 119


>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
           similar to zinc finger protein GB:BAA33206 [Oryza
           sativa]
          Length = 372

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 131 HHNEGECTQNYQGKRRPISCGTLAPCSLHLRSVWLCCV 244
           +++    T   Q KR+ ISC +  P S  L S+W  C+
Sbjct: 82  NNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCL 119


>At1g31960.1 68414.m03929 hypothetical protein
          Length = 173

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 460 NPVSVKETSSHDCTVKGTNGRLRKHSL 380
           NP S++     D  VKG+NG +R HS+
Sbjct: 105 NPTSIRRKLFDDAGVKGSNGVVRFHSV 131


>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
           contains similarity to CONSTANS homologs
          Length = 373

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 134 HNEGECTQNYQGKRRPISCGTLAPCSLHLRSVWLCCVPDNQS 259
           H+    T     KR+ I+C +  P S  L S+W  C+  N S
Sbjct: 76  HDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDLNIS 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,740,002
Number of Sequences: 28952
Number of extensions: 282976
Number of successful extensions: 603
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)