Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120908.seq
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0812 + 24847716-24847988,24848123-24848221,24848977-248492...    29   2.4  
01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678     29   3.2  
04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471           28   5.6  
11_02_0036 + 7599646-7599950,7600106-7600145,7600403-7600437,760...    28   7.4  
07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206     27   9.8  
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668...    27   9.8  

>06_03_0812 +
           24847716-24847988,24848123-24848221,24848977-24849229,
           24850064-24850174,24850558-24850694,24850821-24850934,
           24851025-24851224,24851366-24851560,24851636-24851795
          Length = 513

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 493 WPTDRLVV--LQATTQPIPASKKRQTAVLTNANLGRIKRELRNARLSFISGVLQ 648
           WP+DR++V  L  +T P+     +       +   RIK E+R+ R+ + +G L+
Sbjct: 105 WPSDRVIVQVLDDSTDPVIKEMVQVECKRWESKGVRIKYEIRDNRVGYKAGALR 158


>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
          Length = 261

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 321 KKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFV 455
           +   I+ N Y+   +W T+  QP    S   W L K +   A +V
Sbjct: 133 RSSTISENSYLCVATWDTRAPQPSQIESAVRWALRKRSQNKAVYV 177


>04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471
          Length = 331

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 369 YTKIKQPEWPSSPAMWDLVKNTPELADFVFI-FDHTEK 479
           + +  +PEWPSS A+     N PEL   V +  D T K
Sbjct: 169 HDQTNKPEWPSSVAVQHDQTNKPELPSSVAVQHDQTNK 206


>11_02_0036 +
           7599646-7599950,7600106-7600145,7600403-7600437,
           7600789-7601189,7601281-7601361,7601451-7601536
          Length = 315

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 485 THLFSVIKNEHKICQFGRVFHQIP 414
           TH F  +K E+ IC F R    IP
Sbjct: 198 THSFDAMKKEYYICGFARSIESIP 221


>07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206
          Length = 961

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 18  FITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 137
           FIT     C+    + +KN   +FQR T+I  G   G  +
Sbjct: 806 FITRIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 845


>01_05_0501 +
           22764978-22765896,22766087-22766349,22766613-22766836,
           22767419-22767749,22767968-22768372
          Length = 713

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +1

Query: 163 KNEKLLNKLESSSYNKSNMDQLIAIVNFLEKRTLTISST*CLSCRTNAK 309
           KN  LL +LES  ++K + +++   +  L+ R +++     L+C + +K
Sbjct: 405 KNTSLLQRLESGDHDKLHAEKVRDNIEELQARIISLEEAVGLTCLSISK 453


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,988,192
Number of Sequences: 37544
Number of extensions: 374612
Number of successful extensions: 899
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)