Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120908.seq
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical p...    28   5.0  
U49830-7|AAM98046.1|  774|Caenorhabditis elegans Neuronal igcam ...    28   5.0  
U49830-6|AAK31481.1|  964|Caenorhabditis elegans Neuronal igcam ...    28   5.0  
U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam ...    28   5.0  
U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam ...    28   5.0  
AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA ...    28   6.6  
AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line hel...    28   6.6  
Z37092-3|CAA85454.1|  266|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical
           protein F18H3.4 protein.
          Length = 459

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/76 (30%), Positives = 35/76 (46%)
 Frame = +1

Query: 103 KSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKRTLTISST* 282
           K N+    EQ   TE  A+ +N+KLL  L   + ++  MDQ +   N ++K  +    T 
Sbjct: 121 KRNLSARDEQALVTEIDALKRNKKLLESLAEITSHRKGMDQELE-KNRIQKHKVYFELT- 178

Query: 283 CLSCRTNAKCPNARRR 330
             SC+   K     RR
Sbjct: 179 --SCQNRFKQMKQERR 192


>Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical
           protein T06E6.6 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 404 ATRPLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 279
           A  PLG+L     VPT  Q  F+  N  ++   HF  V+ +R+Y
Sbjct: 72  AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114


>Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical
           protein F20E11.15 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = -3

Query: 485 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVP---TVKQNVFIVV---NHLL 324
           T LF++I +   IC+ G+  ++ P       L L+D+ +     V  ++F+ V   N+LL
Sbjct: 186 TLLFAIILSLKLICKAGKTTNKDPTMNRANRLALIDVIIIFFFDVLLSIFLTVFDQNNLL 245

Query: 323 LAFGHFAFVLHD 288
              G FA VL +
Sbjct: 246 TNSGPFASVLRE 257


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
            B0024.8 protein.
          Length = 1185

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 273  LNVMPVMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNT 434
            ++++P M    K S  K++     +Y   +  ++ +K KQ E  + P +WD VKN+
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNS 1138


>U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical
           protein C25E10.10 protein.
          Length = 169

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 95  PLKRPACILDDIFF*CPTAWQFVCDEDTPSC 3
           P+++P C  D+    C +A +  CD + P C
Sbjct: 71  PIRKPECEGDEELKACGSACEPTCDNENPEC 101


>U49830-7|AAM98046.1|  774|Caenorhabditis elegans Neuronal igcam
           protein 6, isoform c protein.
          Length = 774

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 241 NFLEKRTLTISST*CLSCRTNAKCPNA 321
           NFL++ T+ +S    L+C  +A+CP A
Sbjct: 214 NFLDEETVNMSCEVELTCENSAECPEA 240


>U49830-6|AAK31481.1|  964|Caenorhabditis elegans Neuronal igcam
           protein 6, isoform a protein.
          Length = 964

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 241 NFLEKRTLTISST*CLSCRTNAKCPNA 321
           NFL++ T+ +S    L+C  +A+CP A
Sbjct: 404 NFLDEETVNMSCEVELTCENSAECPEA 430


>U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam
           protein 6, isoform b protein.
          Length = 1227

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 241 NFLEKRTLTISST*CLSCRTNAKCPNA 321
           NFL++ T+ +S    L+C  +A+CP A
Sbjct: 667 NFLDEETVNMSCEVELTCENSAECPEA 693


>U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam
           protein 6, isoform d protein.
          Length = 1196

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 241 NFLEKRTLTISST*CLSCRTNAKCPNA 321
           NFL++ T+ +S    L+C  +A+CP A
Sbjct: 636 NFLDEETVNMSCEVELTCENSAECPEA 662


>AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA
           helicase-3 protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +1

Query: 100 QKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKRTLTISST 279
           +    ++  + Q STE  +    E+  +    SSY     D+       LE +   IS+T
Sbjct: 144 ENEGSIHRSDDQVSTENCSAKDEERDRDSGGVSSYGNKRSDEFCGTSPILEAKGFGISNT 203

Query: 280 *CLSCR 297
            C +C+
Sbjct: 204 -CFNCK 208


>AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line
           helicase protein 3 protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +1

Query: 100 QKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKRTLTISST 279
           +    ++  + Q STE  +    E+  +    SSY     D+       LE +   IS+T
Sbjct: 144 ENEGSIHRSDDQVSTENCSAKDEERDRDSGGVSSYGNKRSDEFCGTSPILEAKGFGISNT 203

Query: 280 *CLSCR 297
            C +C+
Sbjct: 204 -CFNCK 208


>Z37092-3|CAA85454.1|  266|Caenorhabditis elegans Hypothetical
           protein F44F4.3 protein.
          Length = 266

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 115 VNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKRT 261
           V + E Q   E +++CK E   +K+E  +  ++ M  +   + F E  T
Sbjct: 70  VTLEEIQGKRELSSICKMEAYTSKIEDKTKQRNYMATITRQLKFSEALT 118


>AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical
           protein Y39G8C.1 protein.
          Length = 1195

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
 Frame = +3

Query: 222 PANCYCKFLGKKNINYILNVMPVMQDERKM----SKRKKKVINNNKYILFNSWYTKIKQP 389
           PAN      GK+N    + ++P ++++R +    +KR +     N      S    I  P
Sbjct: 610 PANFETDLNGKRNEWEAVVLIPFIEEKRLLEAIEAKRSRLTSEENARNSHGSHIQCISSP 669

Query: 390 EWPSSPAMWDLVKN 431
           E P+S   W  V++
Sbjct: 670 EPPNSQGQWRTVRS 683


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,943,357
Number of Sequences: 27780
Number of extensions: 352514
Number of successful extensions: 975
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)