Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120907.seq
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0248 - 1841454-1841820,1842223-1842728                           31   0.60 
03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401     31   1.0  
01_03_0018 - 11686420-11687460                                         30   1.8  
09_02_0060 + 3729613-3729863,3730377-3730392                           28   5.6  
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774...    28   5.6  
02_04_0609 + 24312528-24313352                                         28   7.4  
01_07_0008 + 40389744-40389896,40389967-40390048,40390693-403908...    28   7.4  

>12_01_0248 - 1841454-1841820,1842223-1842728
          Length = 290

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 24/96 (25%), Positives = 39/96 (40%)
 Frame = -1

Query: 516 FESNMPLSSTVLVGVIPLNTINMDLNSLISKFAVPRVMVTLLDVLAAFGDLTP*SYTVPR 337
           F    P S T  +  +  + ++   N L +    P  +V  L+      D  P   ++P 
Sbjct: 78  FMVTFPKSGTTWLKTLLHSALHRGANDLAAHS--PHQLVPFLETQVFIKDRIPDLSSLPA 135

Query: 336 KMLLVPTLLEPSLTMSSIDSGFSAIYICSIYYRRVR 229
             LL+  +   SL  S  DSG   +Y+C    R+ R
Sbjct: 136 PRLLMTHIPSQSLPDSVADSGCKVVYLCRDPNRKFR 171


>03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401
          Length = 500

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 525 HDCVLDRPQHGAAVPNERCANCANPTALWCTRKT 626
           HDC  D+P  GAA     C+ C+ P A+   R++
Sbjct: 5   HDCDPDQPPAGAAAGASPCSCCSTPCAVATWRRS 38


>01_03_0018 - 11686420-11687460
          Length = 346

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 414 PRVMVTLLDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIC 253
           P  +V  L++     D  P   ++P   LL   +  PSL  S   SG   +Y+C
Sbjct: 119 PHQLVPFLEIQVYVRDRAPDLSSLPAPRLLATHIPRPSLPASVAISGCKVVYMC 172


>09_02_0060 + 3729613-3729863,3730377-3730392
          Length = 88

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 225 ANWPPGRY*ALRLIVCSRLIPPIRC 151
           A WPP RY + R   C R +P + C
Sbjct: 35  AKWPPSRYRSYR-ATCCRAVPSLLC 58


>02_05_0642 +
           30576158-30576289,30576436-30576503,30577167-30577487,
           30578318-30579146
          Length = 449

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 180 CSRLIPPIRC-SALNWATPRLR 118
           CS  +PP+RC   L W+ PR++
Sbjct: 23  CSSRLPPLRCFVGLRWSAPRIQ 44


>02_04_0609 + 24312528-24313352
          Length = 274

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
 Frame = -1

Query: 510 SNMPLSSTVLVGVIPLNT--------INMDLNSLISKFAVPRVMVTLLDVLAAFGDLTP* 355
           S + LS+ +LVG IP N         +++D N+L          +T L++L  F +    
Sbjct: 150 SYLDLSTNLLVGAIPANISLLSNLEYLDLDQNNLTGTVLQTIGDITSLEILYLFQNQL-- 207

Query: 354 SYTVPRKMLLVPTLLEPSLTMSSIDSG 274
           S ++P K+  +P L++  L  +++  G
Sbjct: 208 SGSIPDKIWQLPNLMQLVLGENNLSGG 234


>01_07_0008 +
           40389744-40389896,40389967-40390048,40390693-40390808,
           40391107-40391195,40391859-40391904,40392248-40392716,
           40392825-40392952,40393182-40393253,40393512-40393885,
           40394005-40394545,40394653-40394952,40395167-40395268
          Length = 823

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 514 RIQHAIVLYSFSGRYTFEYNKHGFKFLDIKVCGAARHGHITRCA 383
           RIQ A  ++SF  +        G   + I+  GAA HG + + A
Sbjct: 620 RIQTAFRIFSFRKKQQAGLQNRGNHIISIREVGAASHGMLEKAA 663


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,469,583
Number of Sequences: 37544
Number of extensions: 363605
Number of successful extensions: 1020
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)