Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120907.seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47134| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_28145| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.5e-05)       33   0.26 
SB_58467| Best HMM Match : 7tm_1 (HMM E-Value=3.6e-10)                 29   4.3  
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               28   5.7  
SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_2574| Best HMM Match : DUF217 (HMM E-Value=0.066)                   27   9.9  
SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)             27   9.9  
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.9  

>SB_47134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -1

Query: 612 TRVQLDLRNSRTSRSEQRPRVGVDQAHN 529
           +++Q+DL+N RTSR E   RV  D  HN
Sbjct: 247 SKLQVDLQNERTSRKETESRVNGDVNHN 274


>SB_28145| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.5e-05)
          Length = 340

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = -3

Query: 496 VLYSFSGRYTFEYNKHGFKFLDIKVCGAARHGHITRCAGRVWRFNSIVVYGAQKNAVSAH 317
           ++ S+  R +FE NK+   ++  K C     G+I    G     + +VV G+  NA+   
Sbjct: 203 LMRSYKFRLSFE-NKNCVDYITEKYCYPLEKGNIPIVLGGASYDSKLVVPGSYINALDFP 261

Query: 316 FVGALFDYVVY 284
            V AL DY+ Y
Sbjct: 262 SVKALADYIQY 272


>SB_58467| Best HMM Match : 7tm_1 (HMM E-Value=3.6e-10)
          Length = 340

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
 Frame = -1

Query: 498 LSSTVLVGVIPLNTINMDLNSLISKFAVPRVMVTLLDVLAAFGDLTP*SYTVPRKMLLVP 319
           L S +LV +I L+ +N+ + SL+    VPR  + LL    AF D           +LL P
Sbjct: 35  LVSLLLVVIIGLS-LNLSVISLVMMKKVPRRNMNLLVANMAFSDFL--------SLLLEP 85

Query: 318 TLLEPSLTMSS--IDSGFSAIYICSIYYRRVRCANW 217
           + L   +T++S  I   + A   C  Y   +  + W
Sbjct: 86  SSLLSQMTVNSPWIGVSYLADVTCKFYTFVMNTSTW 121


>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 260  YIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANFDIKE 439
            +I  K L+++ I K+  N  GT+ +   T  DYG  S N      N    R T    ++E
Sbjct: 1382 HIGRKTLAVNKIDKDDDNDDGTDEVVKQTFDDYG--SRNEVVWHGNRIQERSTKRAALEE 1439


>SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 177 SRLIPPIR-CSALNWATPRLRNLNLMHSSNRDKSVRAKRSI 58
           S ++PP R  S+  W  PR RNL +   S R K  R +R++
Sbjct: 156 SVVLPPHRLASSTKWTRPR-RNLEVGDISTRQKWTRPRRNL 195


>SB_2574| Best HMM Match : DUF217 (HMM E-Value=0.066)
          Length = 225

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 612 TRVQLDLRNSRTSRSEQRPRVG 547
           +++Q+DL+N RTSR E   R G
Sbjct: 49  SKLQVDLQNERTSRKETEDRQG 70


>SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)
          Length = 999

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 47  ENRVIDRFARTDLSLLDECIKFKFLNRGVAQFRAEQRIGGIRREQT 184
           E R +DRF+    + +  CI  +F  R  A+   E R+  +R++QT
Sbjct: 852 ERRGVDRFSEKPQAQITRCIPHRF--RLTARHSKELRVCMLRQQQT 895


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/73 (26%), Positives = 38/73 (52%)
 Frame = -1

Query: 279  SGFSAIYICSIYYRRVRCANWPPGRY*ALRLIVCSRLIPPIRCSALNWATPRLRNLNLMH 100
            SG +A    S+Y RR RC++W  G +     ++ SR+   +R  A+   +  + + ++  
Sbjct: 1135 SGPTAHVTYSMYGRRGRCSHWTGGNWANDVYVILSRV--GVRDQAIGMQSRYIPDRSIRA 1192

Query: 99   SSNRDKSVRAKRS 61
            SS  D++   +R+
Sbjct: 1193 SSQWDRNHGPERA 1205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,416,037
Number of Sequences: 59808
Number of extensions: 426043
Number of successful extensions: 1384
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)