Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120907.seq
         (648 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF415317-1|ABO26898.1|   74|Homo sapiens T cell receptor beta ch...    31   4.7  
AJ415697-1|CAC94597.2|   87|Homo sapiens immunoglobulin kappa ch...    30   6.2  

>EF415317-1|ABO26898.1|   74|Homo sapiens T cell receptor beta chain
           protein.
          Length = 74

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -1

Query: 300 LTMSSIDSGFSAIYICSIYYRRVR 229
           L MSS++ G SA+Y C+  Y RVR
Sbjct: 35  LNMSSLELGDSALYFCASSYNRVR 58


>AJ415697-1|CAC94597.2|   87|Homo sapiens immunoglobulin kappa chain
           variable region protein.
          Length = 87

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -1

Query: 309 EPSLTMSSIDSGFSAIYICSIYYRRVRCANWPPGRY 202
           E +LT+SS+ S   A+Y C  Y       NWPPG Y
Sbjct: 54  EFTLTISSLQSEDFAVYYCQQYN------NWPPGMY 83


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,060,491
Number of Sequences: 237096
Number of extensions: 1974386
Number of successful extensions: 13874
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13872
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)