Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120907.seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    30   1.6  
AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL031633-14|CAA21032.1|  903|Caenorhabditis elegans Hypothetical...    28   5.0  
AL031633-13|CAA21027.1|  951|Caenorhabditis elegans Hypothetical...    28   5.0  
AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical...    28   5.0  
AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gam...    28   5.0  
AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gam...    28   5.0  
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
           protein Y45F10B.10 protein.
          Length = 1592

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 301 FDYVVYR*RFFGNIHLLNLLSPCAMRKL 218
           F+YV Y  R+FG  HLL+L   CA + L
Sbjct: 750 FEYVDYVTRYFGISHLLSLYEECATQIL 777


>AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical
           protein Y48G9A.9a protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 108 NLNSLTEASPSLGQSSESVESDENKRLNVK-LNNARVANLRI 230
           N N++ E  P+  QSS   E+D++ R  V+ LNN  +A  ++
Sbjct: 17  NNNNVNEKRPASAQSSNGTETDDHHRKYVETLNNFIIATEKL 58


>Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical
           protein F07H5.8 protein.
          Length = 872

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -2

Query: 632 LPRFSCTPECSWICAIRAPLVR-NSGPVLGSIKHTIMLSTSNPTC 501
           +P+ SC P+C   C       + N    +  I  T   STS+P C
Sbjct: 477 IPQSSCVPQCQPACTQECVAAQPNFSVQINMIDETPSTSTSSPQC 521


>AL031633-14|CAA21032.1|  903|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15c protein.
          Length = 903

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 534 VLDRPQHGA--AVP-NERCANCANPTALWCT 617
           V +RP   A  ++P N RCA+C NP++ W +
Sbjct: 615 VANRPDIAALRSIPGNGRCADCGNPSSEWAS 645


>AL031633-13|CAA21027.1|  951|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15b protein.
          Length = 951

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 534 VLDRPQHGA--AVP-NERCANCANPTALWCT 617
           V +RP   A  ++P N RCA+C NP++ W +
Sbjct: 663 VANRPDIAALRSIPGNGRCADCGNPSSEWAS 693


>AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15a protein.
          Length = 1107

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 534 VLDRPQHGA--AVP-NERCANCANPTALWCT 617
           V +RP   A  ++P N RCA+C NP++ W +
Sbjct: 819 VANRPDIAALRSIPGNGRCADCGNPSSEWAS 849


>AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gamma
           1B protein.
          Length = 1107

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 534 VLDRPQHGA--AVP-NERCANCANPTALWCT 617
           V +RP   A  ++P N RCA+C NP++ W +
Sbjct: 819 VANRPDIAALRSIPGNGRCADCGNPSSEWAS 849


>AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gamma
           1A protein.
          Length = 952

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 534 VLDRPQHGA--AVP-NERCANCANPTALWCT 617
           V +RP   A  ++P N RCA+C NP++ W +
Sbjct: 664 VANRPDIAALRSIPGNGRCADCGNPSSEWAS 694


>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
           protein C01G5.4 protein.
          Length = 1079

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 380 ASTSSNVTMTRGTANFD--IKEFKSMFIVFKGIT 475
           A+TS+NVT  + T NFD  +K    +  V  GIT
Sbjct: 133 ATTSTNVTNAKSTTNFDGYLKHISVIAHVANGIT 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,004,460
Number of Sequences: 27780
Number of extensions: 314024
Number of successful extensions: 999
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)