Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120906.seq
         (648 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P12828 Cluster: Early 40.9 kDa protein; n=5; Nucleopoly...   209   4e-53
UniRef50_O10278 Cluster: Putative early 40.3 kDa protein; n=8; N...    93   5e-18
UniRef50_UPI00006CCA52 Cluster: TPR Domain containing protein; n...    36   1.1  
UniRef50_A0EYZ5 Cluster: Putative uncharacterized protein; n=1; ...    35   2.0  
UniRef50_Q67RK6 Cluster: Putative coenzyme A ligase; n=1; Symbio...    33   6.0  
UniRef50_Q62J76 Cluster: ABC transporter, periplasmic substrate-...    33   7.9  
UniRef50_Q6C768 Cluster: Similar to DEHA0A13277g Debaryomyces ha...    33   7.9  

>UniRef50_P12828 Cluster: Early 40.9 kDa protein; n=5;
           Nucleopolyhedrovirus|Rep: Early 40.9 kDa protein -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 353

 Score =  209 bits (511), Expect = 4e-53
 Identities = 97/125 (77%), Positives = 106/125 (84%)
 Frame = +1

Query: 250 IKCIDFDYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVMLKCYQNGAYR 429
           +KCIDFDYYG C+K MFCNLQTNLQKCVDQHYAELDVLTRQ+YMS+PLV+LKCYQNGAYR
Sbjct: 72  LKCIDFDYYGFCAK-MFCNLQTNLQKCVDQHYAELDVLTRQVYMSDPLVVLKCYQNGAYR 130

Query: 430 LNGQIDLHLNRHIKCIKTQYNDEFDLVDLHYKLI*QAHTASTSIPTTGVKITTAPLSFNV 609
           LNGQI+LHLNRHIKCIKTQYNDEFDLV    ++   +          GVKITTAPLSFNV
Sbjct: 131 LNGQINLHLNRHIKCIKTQYNDEFDLVRFALQIDITSADGVDEYTDNGVKITTAPLSFNV 190

Query: 610 FFVNV 624
           FFVNV
Sbjct: 191 FFVNV 195



 Score =  145 bits (352), Expect = 7e-34
 Identities = 71/74 (95%), Positives = 72/74 (97%)
 Frame = +2

Query: 32  MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA 211
           MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA
Sbjct: 1   MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA 60

Query: 212 VTCHIDDDDYKSAL 253
           VTCHIDDD  +SAL
Sbjct: 61  VTCHIDDD--RSAL 72


>UniRef50_O10278 Cluster: Putative early 40.3 kDa protein; n=8;
           Nucleopolyhedrovirus|Rep: Putative early 40.3 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 355

 Score = 93.1 bits (221), Expect = 5e-18
 Identities = 42/68 (61%), Positives = 51/68 (75%)
 Frame = +2

Query: 32  MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA 211
           M+R+ +Q+  G LPYITT D+EDRLR++I AKA   F K CFEAVV +  GLFVL+GGAA
Sbjct: 1   MDRVASQIYSGALPYITTMDMEDRLRNRIAAKAGAKFFKACFEAVVADKSGLFVLSGGAA 60

Query: 212 VTCHIDDD 235
             CHI DD
Sbjct: 61  TACHIGDD 68



 Score = 80.6 bits (190), Expect = 3e-14
 Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 1/126 (0%)
 Frame = +1

Query: 250 IKCIDFDYYGLCSKKM-FCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVMLKCYQNGAY 426
           +KC+DFDYY    + +    LQ  LQ CV  +   L  L + + M + L ++KC+QNGA+
Sbjct: 72  LKCLDFDYYNATQEWLQLARLQQRLQACVQDNLEILSRLAQSVRMQDDLFVVKCFQNGAF 131

Query: 427 RLNGQIDLHLNRHIKCIKTQYNDEFDLVDLHYKLI*QAHTASTSIPTTGVKITTAPLSFN 606
             NG +   L   ++ ++T +N EFDL+    ++  +A           V +      FN
Sbjct: 132 CFNGPVQARLVPCVETVRTSFNGEFDLLRFALQVELKALNGVDEYVDQKVIVDRGAAVFN 191

Query: 607 VFFVNV 624
           VFFVN+
Sbjct: 192 VFFVNI 197


>UniRef50_UPI00006CCA52 Cluster: TPR Domain containing protein; n=1;
            Tetrahymena thermophila SB210|Rep: TPR Domain containing
            protein - Tetrahymena thermophila SB210
          Length = 3418

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 29/116 (25%), Positives = 55/116 (47%)
 Frame = +1

Query: 271  YYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVMLKCYQNGAYRLNGQIDL 450
            YY L +K+M+   +  LQKC++  +  L  +  +      +  LK   + AY+    ID 
Sbjct: 2749 YYYL-NKEMYEEAKEALQKCLNYDFVSLQSIYSKPLTLKDIHKLKIGLSLAYKEVKDIDK 2807

Query: 451  HLNRHIKCIKTQYNDEFDLVDLHYKLI*QAHTASTSIPTTGVKITTAPLSFNVFFV 618
                  +C+    ND  +++ LH K++ Q    S+SI      +++ P S+ V ++
Sbjct: 2808 SFALIKQCLDKNPNDP-EVIKLHAKVLQQQGNLSSSIIQYQKYLSSNPNSYEVQYL 2862


>UniRef50_A0EYZ5 Cluster: Putative uncharacterized protein; n=1;
           Ecotropis obliqua NPV|Rep: Putative uncharacterized
           protein - Ecotropis obliqua NPV
          Length = 393

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = +2

Query: 68  LPYITTKDIEDRLRDKIVAKAKLAF---IKDCFEAVVCENGGLFVLTGGAAVTCHIDDDD 238
           LPYI+ K + D + + I+++    F   + DC E ++       ++ GGAA+  H+ DD+
Sbjct: 14  LPYISKKAVNDAMCNYILSQMPKMFYSEVYDCVERILHRQK--CIVKGGAAIAAHLQDDN 71


>UniRef50_Q67RK6 Cluster: Putative coenzyme A ligase; n=1;
           Symbiobacterium thermophilum|Rep: Putative coenzyme A
           ligase - Symbiobacterium thermophilum
          Length = 445

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = +1

Query: 208 GCDMPYRRRRLQKRIKCIDFDYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMSN 387
           G   P  R+RL++   C  FD+YG+         +  LQ+ +  H+AE  VL   I   N
Sbjct: 225 GAGEPITRKRLERLYGCPAFDFYGITEVGPLLAGECRLQQGL--HWAEDHVLVEVI---N 279

Query: 388 PLVMLKC 408
           P  M  C
Sbjct: 280 PATMAPC 286


>UniRef50_Q62J76 Cluster: ABC transporter, periplasmic
           substrate-binding protein; n=57; Burkholderiales|Rep:
           ABC transporter, periplasmic substrate-binding protein -
           Burkholderia mallei (Pseudomonas mallei)
          Length = 650

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 457 LSANRFDRLVYRLRFDNISALPTDLTCKFDALTRPIQRNVGRR 329
           +  N F+R+VY+L  D ++ L      ++D L   I RN  RR
Sbjct: 289 IGTNNFERIVYKLYGDGVARLEAFKAGEYDVLVEYIARNWARR 331


>UniRef50_Q6C768 Cluster: Similar to DEHA0A13277g Debaryomyces
           hansenii; n=1; Yarrowia lipolytica|Rep: Similar to
           DEHA0A13277g Debaryomyces hansenii - Yarrowia lipolytica
           (Candida lipolytica)
          Length = 152

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 454 SANR-FDRLVYRLRFDNISALPTDLTCKFDALTRPIQRNVGRRI 326
           + NR F R+ Y   FD +  LPT L C F     P  + V  R+
Sbjct: 31  TGNRVFFRIRYSQEFDQLKTLPTPLLCNFYIRNDPFSKTVSERL 74


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,260,115
Number of Sequences: 1657284
Number of extensions: 11099044
Number of successful extensions: 28013
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28001
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)