Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120906.seq
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557...    29   3.2  
03_02_0068 + 5390004-5390425,5390517-5390949                           28   5.6  
07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601           28   7.4  
03_02_0139 - 5844107-5844278,5844413-5844521,5844630-5844732,584...    27   9.7  

>12_02_1169 -
           26655170-26655332,26655429-26655504,26655603-26655715,
           26655808-26655913,26656001-26656235,26656415-26656573,
           26657279-26657377,26657472-26657568,26657650-26657768,
           26657860-26658000,26658100-26658184,26658287-26658488,
           26659274-26659379
          Length = 566

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 116 IVAKAKLAFIKDCFEAVVCENGGLFVLTGGAAVTCHIDDDD 238
           +   A   F+        C  GGL +L G   V C+ID DD
Sbjct: 439 LTTSASFTFLPFLLRCFFCVFGGLLLLAG-LGVLCYIDQDD 478


>03_02_0068 + 5390004-5390425,5390517-5390949
          Length = 284

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 496 HRCTVFLCILYGGLSANRFDRLVYRLRFDNISALPTDLTCKFDALTRPIQRNVGRRI 326
           HR  ++  +  G ++ + FD   +R R+DN+ A   DL    DAL  P    VG  +
Sbjct: 62  HRVVLYDLVCAGSVNPDHFD---FR-RYDNLDAYVDDLLAILDALRIPRCAFVGHSV 114


>07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601
          Length = 390

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 11  SSSPLFIMERLLNQLNLGVLPYITTKDI--EDRLRDKIVAKAKL 136
           SS    ++E +LN +  G+L Y+   D+  ED +  ++ +K KL
Sbjct: 325 SSPTALVVEGILNSVAAGILIYMALVDLLAEDFMNPRVQSKGKL 368


>03_02_0139 -
           5844107-5844278,5844413-5844521,5844630-5844732,
           5844834-5844865,5845211-5845434,5845774-5845889,
           5845997-5846252,5846720-5846807,5846891-5846962,
           5847096-5847171,5847302-5847360,5848202-5848268,
           5848760-5848825,5850466-5850657
          Length = 543

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 608 TLKDSGAVVILTPVVGILVDAVCACYINL*CKSTKSNSSLYCVFMHFI 465
           TL +   V I     G+     C+  ++L CK+  S +  Y V  HFI
Sbjct: 230 TLNEPHTVAIQGYDAGLQAPGRCSVLLHLYCKAGNSGTEPYVVAHHFI 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,173,188
Number of Sequences: 37544
Number of extensions: 308742
Number of successful extensions: 764
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)