Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120906.seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)                 30   1.9  
SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10)                   28   5.7  
SB_23092| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_38954| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)               27   9.9  
SB_51158| Best HMM Match : VWD (HMM E-Value=0.058)                     27   9.9  
SB_17739| Best HMM Match : DUF885 (HMM E-Value=1.2e-06)                27   9.9  

>SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)
          Length = 412

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 224 IDDDDYKSALNA*ILIITAFAQKKCFATCKLIYKNASTNITLNWTC*RVKFTC 382
           + D++ +   +A  L + AFA KKC  T  +  KNA  +    W C R    C
Sbjct: 350 VGDEELEDFDDAARLSLPAFA-KKCMDTAAVCRKNAGKDWNKRWACRRAFVKC 401


>SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10)
          Length = 218

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = -1

Query: 237 SSSSIWHVTAAPPVNTNKPPFSQTTASKQSLINANFALATILSRKRSSISFVVI*GRTPR 58
           S   + H+  A P   NKP  S  T   ++    N     +L  + + ++F    GRTP 
Sbjct: 136 SLQELEHLLDADPRYVNKPSSSGQTPLHKAAGKGNIESVRLLLTRGADVNFADKQGRTPM 195

Query: 57  FS*FNK 40
              +NK
Sbjct: 196 LLAWNK 201


>SB_23092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 409 YQNGAYRLNGQIDLHLNRHIKCIKTQYNDEFDLVDLHYKLI*QAHTASTSIPTT 570
           + N  YR+NG  D+   RH + I+   N   DL + H        T +T+   T
Sbjct: 129 WANLVYRINGFKDIICERHNRTIQCPANKTIDLSNNHEDNTTTVQTTATTAKKT 182


>SB_38954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 151 IFDKCQLCFSHNFIAQAIFNILCRNI 74
           IFD CQ+ FSH       +N+  R++
Sbjct: 13  IFDNCQVAFSHGDDVGTTYNVRVRSV 38


>SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)
          Length = 322

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 235 RLQKRIKCID--FDYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYM 381
           R  ++IKC +   DY+   S K FCN  T L  C   +Y  +  + + +Y+
Sbjct: 133 RYSRKIKCDNSQIDYHPTRSLKHFCNTYTILILC---YYPAILCIVKPVYL 180


>SB_51158| Best HMM Match : VWD (HMM E-Value=0.058)
          Length = 496

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 151 IFDKCQLCFSHNFIAQAIFNILCRNI 74
           IFD CQ+ FSH       +N+  R++
Sbjct: 118 IFDNCQVAFSHGDDVGTTYNVRVRSV 143


>SB_17739| Best HMM Match : DUF885 (HMM E-Value=1.2e-06)
          Length = 296

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 412 QNGAYRLNGQIDLHLNRHIKCIKTQYNDEFDLVDLHYKLI*Q 537
           Q  AY + GQ+D+  +R       Q  D FDL D HY+++ Q
Sbjct: 195 QATAYMI-GQLDIKKSRQYAI--EQLGDAFDLKDFHYQVLKQ 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,322,231
Number of Sequences: 59808
Number of extensions: 376686
Number of successful extensions: 863
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)