Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120906.seq
         (648 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-1766|ABC65889.1|  172|Drosophila melanogaster CG34048-P...    29   5.4  
BT016138-1|AAV37023.1|  358|Drosophila melanogaster AT29763p pro...    28   9.5  
BT001261-1|AAN71017.1|  358|Drosophila melanogaster AT02529p pro...    28   9.5  
AE013599-269|AAM70840.1|  358|Drosophila melanogaster CG30156-PA...    28   9.5  

>AE014134-1766|ABC65889.1|  172|Drosophila melanogaster CG34048-PA
           protein.
          Length = 172

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 167 VCENGGLFVLTGGAAVTCH 223
           VC+NGG     G AA+TCH
Sbjct: 49  VCQNGGTCKHIGDAAITCH 67


>BT016138-1|AAV37023.1|  358|Drosophila melanogaster AT29763p
           protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 313 TNLQKCVDQHYAELDVLTRQIYMSNPLVMLKCYQNGAYRLN 435
           T L K  +Q  AEL+V   ++Y+S+  +  KC Q  ++R N
Sbjct: 267 TTLSKYTEQQLAELEVEIEEVYISD--LKHKCRQERSWRDN 305


>BT001261-1|AAN71017.1|  358|Drosophila melanogaster AT02529p
           protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 313 TNLQKCVDQHYAELDVLTRQIYMSNPLVMLKCYQNGAYRLN 435
           T L K  +Q  AEL+V   ++Y+S+  +  KC Q  ++R N
Sbjct: 267 TTLSKYTEQQLAELEVEIEEVYISD--LKHKCRQERSWRDN 305


>AE013599-269|AAM70840.1|  358|Drosophila melanogaster CG30156-PA
           protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 313 TNLQKCVDQHYAELDVLTRQIYMSNPLVMLKCYQNGAYRLN 435
           T L K  +Q  AEL+V   ++Y+S+  +  KC Q  ++R N
Sbjct: 267 TTLSKYTEQQLAELEVEIEEVYISD--LKHKCRQERSWRDN 305


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,593,590
Number of Sequences: 53049
Number of extensions: 551534
Number of successful extensions: 1529
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)