Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120906.seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z78063-4|CAB01505.1|  685|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U50829-1|AAC47113.1|  685|Caenorhabditis elegans SEL-1 protein.        28   6.6  

>Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical protein
            F29D11.2 protein.
          Length = 1153

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 216  VTAAPPVNTNKPPFSQTTASKQSLINANFA 127
            +  +PP NT KPP   TTA++ + + A  A
Sbjct: 1112 ILKSPPRNTKKPPSRPTTATRPTAVAARTA 1141


>Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical protein
            F29D11.2 protein.
          Length = 1153

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 216  VTAAPPVNTNKPPFSQTTASKQSLINANFA 127
            +  +PP NT KPP   TTA++ + + A  A
Sbjct: 1112 ILKSPPRNTKKPPSRPTTATRPTAVAARTA 1141


>Z78063-4|CAB01505.1|  685|Caenorhabditis elegans Hypothetical
           protein F45D3.5 protein.
          Length = 685

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 193 VNWRRGCDMPYRRRRLQKRIKCIDFDYYGLCSKKMFCNLQTNLQKCVDQH 342
           +NW+R  +  Y   R    +K  D+ YYGL ++       +N +  VD+H
Sbjct: 539 LNWQRSANQEYAAAR----VKLGDYYYYGLGTEVDHSLAFSNYKMAVDRH 584


>U50829-1|AAC47113.1|  685|Caenorhabditis elegans SEL-1 protein.
          Length = 685

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 193 VNWRRGCDMPYRRRRLQKRIKCIDFDYYGLCSKKMFCNLQTNLQKCVDQH 342
           +NW+R  +  Y   R    +K  D+ YYGL ++       +N +  VD+H
Sbjct: 539 LNWQRSANQEYAAAR----VKLGDYYYYGLGTEVDHSLAFSNYKMAVDRH 584


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,400,276
Number of Sequences: 27780
Number of extensions: 293788
Number of successful extensions: 779
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)