Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120906.seq
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23370.1 68417.m03370 hypothetical protein predicted proteins...    29   2.7  
At4g23360.1 68417.m03369 expressed protein predicted proteins, A...    29   2.7  
At2g02680.1 68415.m00207 DC1 domain-containing protein contains ...    29   3.5  
At4g23350.1 68417.m03368 expressed protein predicted proteins, A...    28   6.1  
At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recogniti...    27   8.1  
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ...    27   8.1  
At2g02610.1 68415.m00200 DC1 domain-containing protein   contain...    27   8.1  

>At4g23370.1 68417.m03370 hypothetical protein predicted proteins,
           Arabidopsis thaliana contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function
          Length = 1021

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 466 IKCIKTQYNDEFDLVDLH 519
           IK +KT+Y D FD +D+H
Sbjct: 667 IKSLKTEYGDIFDCIDIH 684


>At4g23360.1 68417.m03369 expressed protein predicted proteins,
           Arabidopsis thaliana contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function; expression
           supported by MPSS
          Length = 873

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 466 IKCIKTQYNDEFDLVDLHYKLI*QAHTASTSIPTTGVKITTAP 594
           IK  KT++ D FD +D+H +L    H       +  +K TT P
Sbjct: 51  IKSFKTEHGDIFDCIDIHKQLAFDHHLLKNH--SVQLKPTTVP 91



 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 466 IKCIKTQYNDEFDLVDLHYKLI*QAHTASTSIPTTGVKITTAP 594
           IK  KT++ D FD +D+H +L    H       +  +K TT P
Sbjct: 519 IKSFKTEHGDIFDCIDIHKQLALDHHLLKNH--SVQLKPTTVP 559


>At2g02680.1 68415.m00207 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 649

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 518 CKSTKSNSSLYCVFMHFIWRFKCKSI 441
           CKSTK N  L C+   FI  F+C ++
Sbjct: 501 CKSTKENQVLNCIEGDFIICFECATL 526


>At4g23350.1 68417.m03368 expressed protein predicted proteins,
           Arabidopsis thaliana contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function
          Length = 386

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 466 IKCIKTQYNDEFDLVDLHYKLI*QAH 543
           IK  KT++ D FD +D+H +L    H
Sbjct: 51  IKSFKTEHGDIFDCIDIHKQLAFDHH 76


>At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein contains Pfam profile
           PF02493: MORN repeat
          Length = 871

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = -3

Query: 616 QKTR*KTAGLWLF*RQ--LSVYSSTPYALVISICSANLPNQTHRCTVFLCILYGGLS 452
           +K R + AG W   R     VY      L        L  + H CTV +C L+ GL+
Sbjct: 331 EKGRYRYAGQWKHSRMHGCGVYEVNERILYGRFYFGELLEEEHGCTVDICALHSGLA 387


>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
           contains Pfam domain, PF01207: Dihydrouridine synthase
           (Dus)
          Length = 700

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 196 NWRRGCDMPYRRRRLQKRIKCIDFDYYGLCSKKMFCNLQ 312
           NW       + R R Q+  K  D+DY   C+K    NLQ
Sbjct: 498 NWGATAVTIHGRSRQQRYSKSADWDYIYQCTKNATTNLQ 536


>At2g02610.1 68415.m00200 DC1 domain-containing protein   contains
           Pfam profile PF03107: DC1 domain
          Length = 627

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 518 CKSTKSNSSLYCVFMHFIWRFKCKSI 441
           CKSTK+   L C+   FI  F+C ++
Sbjct: 481 CKSTKNKKVLNCIECDFIICFECATL 506


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,217,953
Number of Sequences: 28952
Number of extensions: 255078
Number of successful extensions: 582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)