Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120905.seq
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.3  
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    27   2.3  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 23/82 (28%), Positives = 36/82 (43%)
 Frame = +3

Query: 384  NLTDNSDDPPRPSFKLLRLRQTEQVISARQSAKLTARYDAEIAVLLW*HTVKQSPSGYKY 563
            +L+DN DD  R    L  L +  ++   RQ  +   +       LL   T+K  PS  + 
Sbjct: 849  DLSDNEDDIDRKQ-GLFSLAKANKIPEIRQQERRQVQ-------LLSNSTIKMHPSQIRM 900

Query: 564  LTQRSVAGFRTL*RQGVVIFYK 629
            +T R+VA  +      +  FYK
Sbjct: 901  MTNRNVANVKARLFPSMTDFYK 922


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 247 LFQRQL*SFPNQINVEAELQHAV 179
           LF+ Q+  FPNQ N+  E Q+A+
Sbjct: 74  LFEHQVVCFPNQHNLPPETQYAI 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,216
Number of Sequences: 5004
Number of extensions: 36131
Number of successful extensions: 101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)