Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120905.seq
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621...    41   7e-04
01_03_0142 + 13031297-13031568,13031724-13031952,13032608-13032715     28   7.2  
06_01_0892 - 6827510-6827590,6829348-6830412                           27   9.6  
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613...    27   9.6  

>01_04_0124 + 16359695-16359734,16360217-16360453,16361133-16362104,
            16362211-16362398,16362564-16363942,16364024-16365047,
            16365171-16365566,16367484-16367999,16368085-16368226,
            16369409-16369553,16371351-16371432,16371851-16371895,
            16372018-16372140
          Length = 1762

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 20/54 (37%), Positives = 31/54 (57%)
 Frame = +2

Query: 59   ISGSGIIGLYTTFVFLASRILRGFFSGIYTKIMFDDLPNVDRVLQLCLDIYLVR 220
            +S   I  LY TFV   +R +R   S +  +I +++LP+ DR+L +C  IY  R
Sbjct: 1639 LSKFSIWSLYITFVLAVARFIRLQCSDLRMRIPYENLPSCDRLLDICEGIYAAR 1692


>01_03_0142 + 13031297-13031568,13031724-13031952,13032608-13032715
          Length = 202

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -2

Query: 419 RTWWIVRVIREIYNVRAQLLSKREGGSARCSSGSSLGRLH 300
           + WW+ R  +E+   R++      GG      GSS+   H
Sbjct: 107 QAWWLEREGKEVAKGRSEFGEDSNGGKPATIEGSSIAAFH 146


>06_01_0892 - 6827510-6827590,6829348-6830412
          Length = 381

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 118 YPRREEHERRVQPDYTASGY 59
           Y  R +HE++ QP Y +SGY
Sbjct: 84  YGFRPQHEQQQQPSYASSGY 103


>02_02_0017 -
           6131265-6131284,6131654-6131774,6132011-6132146,
           6132423-6132529,6133006-6133099,6133199-6133395,
           6134401-6134472,6135128-6135304,6135393-6135467,
           6135557-6135697,6136439-6136627,6136969-6137034,
           6137118-6137268,6137596-6137664,6138751-6138899,
           6138969-6139100,6139198-6139523,6139599-6139635,
           6139765-6139803,6140196-6140250,6140363-6140424,
           6140512-6140532,6140820-6140822
          Length = 812

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 220 PNQINVEAELQHAVHVGQVVEHDLGVDAGEEAAQYPRREEHERRVQPDYTASG 62
           PN+  VEA     +H+ +V+  + G D  E   +    E  E  V+ D  A G
Sbjct: 737 PNETLVEAFKSMHIHLEEVLPDENGDDTHEAIEENGVEESQEDAVEVDVEADG 789


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,278,852
Number of Sequences: 37544
Number of extensions: 245309
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)