Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120905.seq
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)                84   8e-17
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)                      29   2.4  
SB_41190| Best HMM Match : Extensin_2 (HMM E-Value=0.0029)             29   2.4  
SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)                  28   5.6  
SB_43219| Best HMM Match : zf-CCHC (HMM E-Value=0.0056)                28   5.6  
SB_2850| Best HMM Match : DCX (HMM E-Value=0.11)                       27   9.8  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
          Length = 477

 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 38/72 (52%), Positives = 54/72 (75%)
 Frame = +2

Query: 5   MLVMYTFNDKLFPETLNFISGSGIIGLYTTFVFLASRILRGFFSGIYTKIMFDDLPNVDR 184
           +L M TFND + P   +F + +GIIGLY  FV+L  + +R FF+ I  +IMFD++PNVD+
Sbjct: 372 VLEMITFNDLVPPLHFSFFASTGIIGLYVGFVWLVGKFVRLFFTSISYRIMFDEMPNVDK 431

Query: 185 VLQLCLDIYLVR 220
           VL+LCLDI++VR
Sbjct: 432 VLKLCLDIFMVR 443



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +1

Query: 256 AKLVFLYRSPETMIKWSRPK 315
           AKL+FLYRSPET+IKW++ K
Sbjct: 456 AKLMFLYRSPETLIKWTKYK 475


>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1277

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 135  EKKPRSIRDARNTNVVYSPIIPLPDMKFNVSGKSLSLKVYMTSM 4
            EKK  +  DARN +V  +P++       N S   L LK+Y+ ++
Sbjct: 1073 EKKEFNKMDARNLSVCLAPVMQCAPPNLNDSRDLLDLKLYLKTV 1116


>SB_41190| Best HMM Match : Extensin_2 (HMM E-Value=0.0029)
          Length = 476

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 499 TPRLLYSYGNIPSNRAPAAISTLRNALSRALGRFDVRAL 615
           TP  +Y+Y  +PSN  P  + T     S  +  F  RAL
Sbjct: 413 TPHFMYTYHGVPSNDIPHFMYTYHGVPSSDITHFVFRAL 451


>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
          Length = 1828

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 120  SIRDARNTNVVYSPIIPLPDMKFNVSGKSLSLKVYMTS 7
            S+  A N NV   P+ P+P   F+    ++SL++ ++S
Sbjct: 1731 SLARATNVNVADWPVHPVPTYPFSFENATISLRIRVSS 1768


>SB_43219| Best HMM Match : zf-CCHC (HMM E-Value=0.0056)
          Length = 693

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 357 REELSTHIINLTDNSDDPPRPSFKLLRLRQTEQVISARQSAKLTARYDAEI 509
           R+E   +I  L    D PP PS K   L++   +    +   LTA+Y AEI
Sbjct: 528 RDENGCYITGLPWKGDHPPLPSNKAGSLQRLASLTKKLERQDLTAKY-AEI 577


>SB_2850| Best HMM Match : DCX (HMM E-Value=0.11)
          Length = 198

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 192 SSASTFIWFGKL*SCLWKRTYCETGVPVSVAGDY 293
           +S+ TFI   K      K TYCE G+PV VA  Y
Sbjct: 5   NSSVTFISVYKKILTNLKTTYCELGLPVLVAEYY 38


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 111  DARNTNVVYSPIIPLPDMKFNVSGKSLSLKVY 16
            D    ++ + PIIPLPD    V+G+    +V+
Sbjct: 3142 DTSGDHIHFEPIIPLPDKVERVTGEEADQEVF 3173


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,531,688
Number of Sequences: 59808
Number of extensions: 279250
Number of successful extensions: 754
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)