Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120905.seq
(642 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK027056-1|BAB15641.1| 544|Homo sapiens protein ( Homo sapiens ... 87 5e-17
AK026797-1|BAB15556.1| 150|Homo sapiens protein ( Homo sapiens ... 85 2e-16
D87071-1|BAA13240.1| 2035|Homo sapiens KIAA0233 protein. 83 6e-16
BC150271-1|AAI50272.1| 2035|Homo sapiens family with sequence si... 83 6e-16
AB161230-1|BAF03565.1| 2090|Homo sapiens Mib protein. 83 6e-16
AL138895-3|CAI17246.1| 907|Homo sapiens deafness, autosomal rec... 31 4.6
AL138895-2|CAI17245.1| 524|Homo sapiens deafness, autosomal rec... 31 4.6
AL138895-1|CAI17244.1| 556|Homo sapiens deafness, autosomal rec... 31 4.6
>AK027056-1|BAB15641.1| 544|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23403 fis, clone HEP18857. ).
Length = 544
Score = 87.0 bits (206), Expect = 5e-17
Identities = 38/71 (53%), Positives = 53/71 (74%)
Frame = +2
Query: 8 LVMYTFNDKLFPETLNFISGSGIIGLYTTFVFLASRILRGFFSGIYTKIMFDDLPNVDRV 187
L + FNDK+ P +L F++G GI+GLY + V + + +R FFSGI IMF++LPNVDR+
Sbjct: 440 LELVVFNDKVSPPSLGFLAGYGIMGLYASVVLVIGKFVREFFSGISHSIMFEELPNVDRI 499
Query: 188 LQLCLDIYLVR 220
L+LC DI+LVR
Sbjct: 500 LKLCTDIFLVR 510
Score = 41.9 bits (94), Expect = 0.002
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 256 AKLVFLYRSPETMIKWSRPK 315
AKL+FLYRSPETMIKW+R K
Sbjct: 523 AKLIFLYRSPETMIKWTREK 542
>AK026797-1|BAB15556.1| 150|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23144 fis, clone LNG09262. ).
Length = 150
Score = 85.0 bits (201), Expect = 2e-16
Identities = 37/70 (52%), Positives = 52/70 (74%)
Frame = +2
Query: 8 LVMYTFNDKLFPETLNFISGSGIIGLYTTFVFLASRILRGFFSGIYTKIMFDDLPNVDRV 187
L + FNDK+ P +L F++G GI+GLY + V + + +R FFSGI IMF++LPNVDR+
Sbjct: 81 LELVVFNDKVSPPSLGFLAGYGIMGLYASVVLVIGKFVREFFSGISHSIMFEELPNVDRI 140
Query: 188 LQLCLDIYLV 217
L+LC DI+LV
Sbjct: 141 LKLCTDIFLV 150
>D87071-1|BAA13240.1| 2035|Homo sapiens KIAA0233 protein.
Length = 2035
Score = 83.4 bits (197), Expect = 6e-16
Identities = 37/73 (50%), Positives = 54/73 (73%)
Frame = +2
Query: 2 DMLVMYTFNDKLFPETLNFISGSGIIGLYTTFVFLASRILRGFFSGIYTKIMFDDLPNVD 181
++L M F+DK+ P +L F++G GI+GLY + V + + +RGFFS I IMF++LP VD
Sbjct: 1930 NLLPMVIFSDKVSPPSLGFLAGYGIMGLYVSIVLVIGKFVRGFFSEISHSIMFEELPCVD 1989
Query: 182 RVLQLCLDIYLVR 220
R+L+LC DI+LVR
Sbjct: 1990 RILKLCQDIFLVR 2002
Score = 44.0 bits (99), Expect = 5e-04
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +1
Query: 256 AKLVFLYRSPETMIKWSRPKE 318
AKL+FLYRSPETMIKW+R KE
Sbjct: 2015 AKLIFLYRSPETMIKWTREKE 2035
>BC150271-1|AAI50272.1| 2035|Homo sapiens family with sequence
similarity 38, member A protein.
Length = 2035
Score = 83.4 bits (197), Expect = 6e-16
Identities = 37/73 (50%), Positives = 54/73 (73%)
Frame = +2
Query: 2 DMLVMYTFNDKLFPETLNFISGSGIIGLYTTFVFLASRILRGFFSGIYTKIMFDDLPNVD 181
++L M F+DK+ P +L F++G GI+GLY + V + + +RGFFS I IMF++LP VD
Sbjct: 1930 NLLPMVIFSDKVSPPSLGFLAGYGIMGLYVSIVLVIGKFVRGFFSEISHSIMFEELPCVD 1989
Query: 182 RVLQLCLDIYLVR 220
R+L+LC DI+LVR
Sbjct: 1990 RILKLCQDIFLVR 2002
Score = 44.0 bits (99), Expect = 5e-04
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +1
Query: 256 AKLVFLYRSPETMIKWSRPKE 318
AKL+FLYRSPETMIKW+R KE
Sbjct: 2015 AKLIFLYRSPETMIKWTREKE 2035
>AB161230-1|BAF03565.1| 2090|Homo sapiens Mib protein.
Length = 2090
Score = 83.4 bits (197), Expect = 6e-16
Identities = 37/73 (50%), Positives = 54/73 (73%)
Frame = +2
Query: 2 DMLVMYTFNDKLFPETLNFISGSGIIGLYTTFVFLASRILRGFFSGIYTKIMFDDLPNVD 181
++L M F+DK+ P +L F++G GI+GLY + V + + +RGFFS I IMF++LP VD
Sbjct: 1985 NLLPMVIFSDKVSPPSLGFLAGYGIMGLYVSIVLVIGKFVRGFFSEISHSIMFEELPCVD 2044
Query: 182 RVLQLCLDIYLVR 220
R+L+LC DI+LVR
Sbjct: 2045 RILKLCQDIFLVR 2057
Score = 44.0 bits (99), Expect = 5e-04
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +1
Query: 256 AKLVFLYRSPETMIKWSRPKE 318
AKL+FLYRSPETMIKW+R KE
Sbjct: 2070 AKLIFLYRSPETMIKWTREKE 2090
>AL138895-3|CAI17246.1| 907|Homo sapiens deafness, autosomal
recessive 31 protein.
Length = 907
Score = 30.7 bits (66), Expect = 4.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -3
Query: 214 QINVEAELQHAVHVGQVVEHDLGVDAGEEAAQYPRR 107
Q + L H GQ + D GVDAGE A P R
Sbjct: 743 QTRTASTLSHLSDSGQTLSEDSGVDAGEAEASAPGR 778
>AL138895-2|CAI17245.1| 524|Homo sapiens deafness, autosomal
recessive 31 protein.
Length = 524
Score = 30.7 bits (66), Expect = 4.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -3
Query: 214 QINVEAELQHAVHVGQVVEHDLGVDAGEEAAQYPRR 107
Q + L H GQ + D GVDAGE A P R
Sbjct: 360 QTRTASTLSHLSDSGQTLSEDSGVDAGEAEASAPGR 395
>AL138895-1|CAI17244.1| 556|Homo sapiens deafness, autosomal
recessive 31 protein.
Length = 556
Score = 30.7 bits (66), Expect = 4.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -3
Query: 214 QINVEAELQHAVHVGQVVEHDLGVDAGEEAAQYPRR 107
Q + L H GQ + D GVDAGE A P R
Sbjct: 392 QTRTASTLSHLSDSGQTLSEDSGVDAGEAEASAPGR 427
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,767,449
Number of Sequences: 237096
Number of extensions: 1252626
Number of successful extensions: 3293
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3291
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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