Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120905.seq
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    60   1e-09
U64598-7|AAK39218.3|  523|Caenorhabditis elegans Twik family of ...    27   8.6  
AY255664-1|AAQ96601.1|  523|Caenorhabditis elegans two-P domain ...    27   8.6  

>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
            protein T20D3.11 protein.
          Length = 1843

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
 Frame = +2

Query: 23   FNDKLFPETLNFISGSGIIGLYTTFVFLASR-ILRGFFSGIYTKIMFDDLPNVDRVLQLC 199
            F D+ FP  L  +   G+I +Y + + +  R ++RG F+   + +MF +LPN D +L++C
Sbjct: 1740 FIDRAFPSFLAKVFKGGVIAVYLSVILVVGRGLVRGIFTTSPSTVMFTELPNADHLLKIC 1799

Query: 200  LDIYLVR 220
            LDIYLVR
Sbjct: 1800 LDIYLVR 1806



 Score = 35.9 bits (79), Expect = 0.025
 Identities = 13/25 (52%), Positives = 21/25 (84%)
 Frame = +1

Query: 256  AKLVFLYRSPETMIKWSRPKEEPEE 330
            AKL+FL+RSP T+I+W+R  ++ +E
Sbjct: 1819 AKLIFLFRSPATLIEWTRMSKKKQE 1843


>U64598-7|AAK39218.3|  523|Caenorhabditis elegans Twik family of
           potassium channelsprotein 28 protein.
          Length = 523

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 348 LTLREELSTHIINLTDNSDDP-PRPSFKLLRLRQTEQVI 461
           L LR+E   HI N+T +SD+   R +F  +     EQ++
Sbjct: 100 LGLRDEFQDHIWNITQDSDNRISREAFNAINQEYFEQLV 138


>AY255664-1|AAQ96601.1|  523|Caenorhabditis elegans two-P domain K
           channel protein.
          Length = 523

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 348 LTLREELSTHIINLTDNSDDP-PRPSFKLLRLRQTEQVI 461
           L LR+E   HI N+T +SD+   R +F  +     EQ++
Sbjct: 100 LGLRDEFQDHIWNITQDSDNRISREAFNAINQEYFEQLV 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,022,169
Number of Sequences: 27780
Number of extensions: 204832
Number of successful extensions: 590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)