Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120905.seq
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g48040.1 68415.m06013 expressed protein                             31   0.86 
At5g58170.1 68418.m07281 glycerophosphoryl diester phosphodieste...    28   4.6  

>At2g48040.1 68415.m06013 expressed protein 
          Length = 294

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 113 RILRGFFSGIYTKIMFDDLPNVDRVLQLCLDIYLVR 220
           R +R   S +  +I +++LP+ DR++ +C D+Y  R
Sbjct: 224 RFIRLQCSDLRMRIPYENLPSCDRLIAICEDLYAAR 259


>At5g58170.1 68418.m07281 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam PF03009 :
           Glycerophosphoryl diester phosphodiesterase family;
           similar to Glycerophosphoryl diester phosphodiesterase
           precursor  (Glycerophosphodiester phosphodiesterase)
           (Surface-exposed lipoprotein D) (Protein D)
           (ImmunoglobulinD-binding protein) (IGD-binding protein)
           (SP:Q06282) {Haemophilus influenzae}
          Length = 750

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 44  ETLNFISGSGIIGLYTTFVFLASRILRGFFSGIYTKIMFDDLP 172
           E   FISGSG+ G+ T F   A+R L+   S +  +  +  LP
Sbjct: 629 ELATFISGSGVDGVITEFPATATRYLKSPCSDLNKEQPYAILP 671


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,286,917
Number of Sequences: 28952
Number of extensions: 188964
Number of successful extensions: 482
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)