Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120904.seq
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    29   0.76 
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo...    28   1.0  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    28   1.0  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    25   7.1  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   7.1  

>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = +3

Query: 165 DMLQTINTTASQTA-ASLLIND---ITPNKTESLKFCLLNLSE 281
           D +Q +NTT+S +A AS  I       PN+ E LK C L+L++
Sbjct: 666 DWVQPVNTTSSVSAFASPRIKPKLLFQPNQDEKLKLCKLDLAK 708


>SPMIT.08 |||mitochondrial ribosomal small
           subunit|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 227

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
 Frame = -3

Query: 487 SSIFNRNLFISKYNAIALIVTDDAHLLCNYHLD-RVVVNAPQKV*HVDRFDSIQLNF--G 317
           S+ +  +L  SKY  IA+I+  +  +     +D +  +N P K+     F  + LN   G
Sbjct: 106 STPYGSSLIFSKY--IAIIIGSNPKIASTLWIDPKRFINLP-KLQSDSIFKILGLNVPKG 162

Query: 316 LVGLHRFQQIARSDRLSRQNFKLSVLLGVMSLINNDAAV*EAVVLMVCNMSTAAICV 146
             G+H    + + + LS +    +++ G + L NN     E+ + +   M T  I V
Sbjct: 163 WKGIHISLNLIKWNSLSSRGRITNIIKGSVPLTNNSNGYDESSLAIYSKMGTIQIKV 219


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 450  YLEINKLRLKIDEPMQLGDMPQIFPLLCDEHQNVAVEHRRVDKF 581
            Y ++    L  D P + G  PQ+F  L D H  +    RR  K+
Sbjct: 1088 YPDLQIAYLDEDPPEEEGAEPQLFAALIDGHSEIMENERRRPKY 1131


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 279 ERAICWNRCKPTRPKLS*IESKRSTC*TFWGAFTTTRSK 395
           E   C N   P  P+++ +  + S     +G+ +TTRSK
Sbjct: 172 ENESCLNNAAPGSPEVAVLSFRHSFHGRLFGSLSTTRSK 210


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 72  YHRYHLLKQSWLSSISRDISLS 7
           Y++  L K+SW  S+S +ISLS
Sbjct: 107 YYQEALRKKSWSRSLSNNISLS 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,583
Number of Sequences: 5004
Number of extensions: 48626
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)