Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120904.seq
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0132 - 20058638-20058907 29 3.2
06_01_1126 - 9277885-9277935,9278129-9278209,9278297-9278350,927... 29 4.2
01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165 29 4.2
12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,178... 28 5.5
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185... 28 5.5
09_06_0056 - 20561645-20561920,20562024-20562611,20562698-205630... 27 9.7
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 27 9.7
01_06_0743 + 31622683-31623723 27 9.7
01_05_0635 - 23847255-23847287,23847397-23848083,23848178-238485... 27 9.7
>02_04_0132 - 20058638-20058907
Length = 89
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 207 RPFERPWC*WFATCRRPPFA 148
+PF PWC + C +PPF+
Sbjct: 14 KPFVAPWCRYPLLCNQPPFS 33
>06_01_1126 -
9277885-9277935,9278129-9278209,9278297-9278350,
9278433-9278564,9278641-9278715,9279056-9279133,
9279215-9279327,9279421-9279535,9280565-9280754,
9281355-9281464,9281559-9281654,9281756-9281818,
9281911-9281988,9282452-9282564,9282664-9282721,
9282797-9282920,9282999-9283060,9283131-9283195,
9283264-9283324,9284242-9284307,9284472-9284531,
9284830-9284960,9285517-9285592,9285701-9285769,
9286065-9286112,9286552-9286671,9286918-9287034,
9287290-9287405,9288348-9288519,9289057-9289100,
9290359-9290712,9291680-9291806
Length = 1072
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 129 PAVCCGGFFVFATCCCQCPYHRYHLLKQ 46
P F A+CCC+ P H+ HL Q
Sbjct: 105 PVDATAPFVASASCCCRHPVHQQHLRLQ 132
>01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165
Length = 476
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 138 KGLPAVCCG--GFFVFATCCCQCPYHRYHLLKQSWLSSISRDISLS 7
K LP + CG G ++F T + + +YHL ++W I I S
Sbjct: 386 KALPTIFCGDTGGYIFHTPPTELFFTQYHLSSRTWSPLIDGSIGNS 431
>12_01_0237 +
1782593-1782778,1784942-1784996,1785086-1787028,
1787103-1787261,1787432-1787603,1787705-1788003,
1788278-1788583
Length = 1039
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -3
Query: 190 VVLMVCNMSTAAICVCAEGFAGGXXXXXXRVCDMLLPVSISSIS 59
++LMVC + + A+ + EG+ G + + L V ++++S
Sbjct: 177 IILMVCALLSVAVGLATEGWPKGMYDGLGIILSIFLVVMVTAVS 220
>11_01_0240 +
1852186-1852371,1854183-1854237,1854391-1856267,
1856342-1856500,1856692-1856863,1856965-1857263,
1857539-1857844
Length = 1017
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -3
Query: 190 VVLMVCNMSTAAICVCAEGFAGGXXXXXXRVCDMLLPVSISSIS 59
++LMVC + + A+ + EG+ G + + L V ++++S
Sbjct: 155 IILMVCALLSVAVGLATEGWPKGMYDGLGIILSIFLVVMVTAVS 198
>09_06_0056 -
20561645-20561920,20562024-20562611,20562698-20563055,
20563149-20563483,20563593-20563633,20563722-20563932,
20564289-20564348,20564432-20564457,20565066-20565264
Length = 697
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 92 VANTKKPPQQTAGKPFGANANGGRR 166
+AN+K+ P TAG G GGRR
Sbjct: 1 MANSKRLPYSTAGGGGGGGGGGGRR 25
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +2
Query: 98 NTKKPPQQTAGKPFGANANGGRRHVANHQHHGLSNGRVVVN 220
NT P +TA G N GR H N GL+ +V N
Sbjct: 242 NTGHPVFETAYGKIGVNICYGRHHPLNWLAFGLNGAEIVFN 282
>01_06_0743 + 31622683-31623723
Length = 346
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +2
Query: 71 YGHWQQHVANTKKPPQQTAGKPFGANANGGRRHV-ANHQHHGLSNGRVVVNQRHYAQ*N 244
YG+ ++ +P + G+ FG NA GG+ + N+Q R R Y N
Sbjct: 243 YGYGRESNPVRTRPEEFNGGRKFGGNAAGGQEYANGNYQEEFGVGHRAGEQVRRYGNGN 301
>01_05_0635 -
23847255-23847287,23847397-23848083,23848178-23848540,
23848633-23848725,23848820-23848870,23849031-23849304,
23849766-23850595
Length = 776
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +2
Query: 107 KPPQQTAGKPFGANANGGRRH--VANHQHHGLSNGRVVVNQRHYAQ*N*KFKILSTQSVG 280
+P A P A GG R + NH HHGL ++ Y Q K ++ S+Q G
Sbjct: 13 QPWSSAAPAPASAPGRGGARREILTNHHHHGLKE-KMRALTLFYEQ--HKQQLASSQGGG 69
Query: 281 AR 286
AR
Sbjct: 70 AR 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,270,059
Number of Sequences: 37544
Number of extensions: 321997
Number of successful extensions: 908
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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